Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr2P15100_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G61740.1 | GSMUA_Achr2P15100_001 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G424800.1 | Wheat | plasma membrane | 51.01 | 48.79 |
| GSMUA_Achr6P00570_001 | Banana | plasma membrane | 68.18 | 28.97 |
| Os01t0786800-01 | Rice | plasma membrane | 62.12 | 28.34 |
| Os01t0786700-00 | Rice | plasma membrane | 52.53 | 26.2 |
| TraesCS3A01G324800.1 | Wheat | plasma membrane | 59.09 | 25.49 |
| TraesCS3B01G353800.1 | Wheat | plasma membrane | 59.6 | 25.16 |
| Zm00001d043240_P002 | Maize | plasma membrane | 58.08 | 25.05 |
| HORVU3Hr1G077530.9 | Barley | plasma membrane | 58.59 | 24.95 |
| TraesCS3D01G318100.1 | Wheat | plasma membrane | 59.09 | 24.89 |
| TraesCS7D01G059100.1 | Wheat | plasma membrane, plastid | 52.02 | 23.9 |
| HORVU7Hr1G012180.2 | Barley | plastid | 51.52 | 23.56 |
| EER96273 | Sorghum | plasma membrane | 50.51 | 23.15 |
| OQU87698 | Sorghum | plasma membrane | 60.1 | 22.75 |
| TraesCS7A01G064300.1 | Wheat | plasma membrane, plastid | 48.48 | 21.87 |
| AT1G11540.2 | Thale cress | plasma membrane | 46.97 | 20.67 |
| Solyc03g031530.2.1 | Tomato | plasma membrane | 46.97 | 20.44 |
| CDX79051 | Canola | plasma membrane | 42.42 | 20.34 |
| CDX82815 | Canola | plasma membrane | 42.42 | 20.34 |
| AT1G61740.1 | Thale cress | plasma membrane | 45.96 | 19.87 |
| KRH41998 | Soybean | plasma membrane | 46.46 | 19.45 |
| KRH49901 | Soybean | plasma membrane | 46.46 | 19.45 |
| Bra031401.1-P | Field mustard | plasma membrane | 43.94 | 18.91 |
| CDY52324 | Canola | plasma membrane | 43.94 | 18.91 |
| VIT_00s0532g00060.t01 | Wine grape | plasma membrane | 43.43 | 18.78 |
| Solyc02g079980.2.1 | Tomato | plasma membrane | 43.43 | 18.74 |
| CDY61959 | Canola | plasma membrane | 43.43 | 18.74 |
| AT4G21250.1 | Thale cress | plasma membrane | 42.42 | 18.71 |
| KRH21651 | Soybean | plasma membrane | 43.94 | 18.47 |
| PGSC0003DMT400055932 | Potato | plasma membrane | 42.93 | 18.4 |
| Bra027077.1-P | Field mustard | plasma membrane | 42.42 | 18.3 |
| CDY12912 | Canola | plasma membrane | 42.42 | 18.3 |
| AT4G21260.1 | Thale cress | plasma membrane | 34.85 | 17.56 |
| Bra013516.1-P | Field mustard | plasma membrane | 30.81 | 15.4 |
| GSMUA_Achr6P31670_001 | Banana | plasma membrane | 25.76 | 13.32 |
| GSMUA_Achr10P... | Banana | plasma membrane | 30.81 | 12.84 |
| GSMUA_Achr4P15550_001 | Banana | plasma membrane | 30.3 | 12.66 |
| GSMUA_Achr6P05790_001 | Banana | plasma membrane | 30.3 | 12.66 |
| GSMUA_Achr2P15360_001 | Banana | plasma membrane | 30.3 | 12.58 |
| GSMUA_Achr7P24830_001 | Banana | golgi, plasma membrane, vacuole | 29.8 | 12.24 |
| GSMUA_Achr7P10890_001 | Banana | plasma membrane | 29.29 | 12.24 |
| GSMUA_Achr3P30510_001 | Banana | plasma membrane | 28.79 | 11.66 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 25.76 | 10.76 |
| HORVU3Hr1G077570.1 | Barley | peroxisome | 9.6 | 5.76 |
| CDY25317 | Canola | plasma membrane | 6.06 | 3.97 |
| GSMUA_Achr4P33570_001 | Banana | extracellular, plasma membrane | 2.53 | 1.81 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P33580_001 | EnsemblPlants:GSMUA_Achr4T33580_001 | EnsemblPlantsGene:GSMUA_Achr4G33580_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:TM_pro_TauE-like | PANTHER:PTHR14255 | PANTHER:PTHR14255:SF10 | PFAM:PF01925 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0002949942 | UniProt:M0SUC0 | MapMan:24.2.6.2 | : | : | : |
Description
membrane protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G33580_001]
Coordinates
chr4:+:29971949..29973014
Molecular Weight (calculated)
21114.4 Da
IEP (calculated)
10.134
GRAVY (calculated)
0.563
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLKPCGVAY WSITFSQVPL SIAFTLYVLY EKNKKKKKKN CRQQEEGEVR TGMAALPMFV FPSAALSAGA LSGLFGIGGG LLLNPVLLQI GIAPQTAAAT
101: STFMVMFSAS MTALQYVILG MTGIGRASVY AALCFVASAT GLVVMKRIIV KSGGRVSLTV FTVTAVMSLS TITVVCYGTA DVWKEYTSGR YMGFRPPC
101: STFMVMFSAS MTALQYVILG MTGIGRASVY AALCFVASAT GLVVMKRIIV KSGGRVSLTV FTVTAVMSLS TITVVCYGTA DVWKEYTSGR YMGFRPPC
001: MRNNFVPIIL SFIIFLTPSI AEQEPSILSP VDQLLNKTSS YLDFSTKFNQ PRIELTTSTI IAGLLSFLAS SISSAGGIGG GGLYVPIMTI VAGLDLKTAS
101: SFSAFMVTGG SIANVGCNLF VRNPKSGGKT LIDFDLALLL EPCMLLGVSI GVICNLVFPN WLITSLFAVF LAWSTLKTFG NGLYYWRLES EMVKIRESNR
201: IEEDDEEDKI ESLKLPLLED YQRPKRFPWI KLGVLVIIWL SYFAVYLLRG NKYGEGIISI EPCGNAYWLI SSSQIPLTLF FTLWICFSDN VQSQQQSDYH
301: VSVKDVEDLR SNDGARSNKC MFPVMALLAG VLGGVFGIGG GMLISPLLLQ VGIAPEVTAA TCSFMVLFSS TMSAIQYLLL GMEHTGTASI FAVICFVASL
401: VGLKVVQKVI TEYGRASIIV FSVGIVMALS IVLMTSYGAL DVWNDYVSGR YMGFKLPC
101: SFSAFMVTGG SIANVGCNLF VRNPKSGGKT LIDFDLALLL EPCMLLGVSI GVICNLVFPN WLITSLFAVF LAWSTLKTFG NGLYYWRLES EMVKIRESNR
201: IEEDDEEDKI ESLKLPLLED YQRPKRFPWI KLGVLVIIWL SYFAVYLLRG NKYGEGIISI EPCGNAYWLI SSSQIPLTLF FTLWICFSDN VQSQQQSDYH
301: VSVKDVEDLR SNDGARSNKC MFPVMALLAG VLGGVFGIGG GMLISPLLLQ VGIAPEVTAA TCSFMVLFSS TMSAIQYLLL GMEHTGTASI FAVICFVASL
401: VGLKVVQKVI TEYGRASIIV FSVGIVMALS IVLMTSYGAL DVWNDYVSGR YMGFKLPC
Arabidopsis Description
Sulfite exporter TauE/SafE family protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYB0]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.