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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 6
  • golgi 3
  • plastid 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:plastid
MultiLoc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G61740.1 OQU92006 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d043240_P002 Maize plasma membrane 74.38 84.75
Os01t0786800-01 Rice plasma membrane 62.52 75.35
TraesCS3A01G324800.1 Wheat plasma membrane 65.2 74.29
TraesCS3B01G353800.1 Wheat plasma membrane 65.58 73.13
TraesCS3D01G318100.1 Wheat plasma membrane 65.58 72.98
GSMUA_Achr4P33580_001 Banana golgi, plasma membrane, plastid 22.75 60.1
EER96273 Sorghum plasma membrane 44.93 54.4
GSMUA_Achr6P00570_001 Banana plasma membrane 46.65 52.36
HORVU3Hr1G077570.1 Barley peroxisome 31.17 49.39
GSMUA_Achr4P33570_001 Banana extracellular, plasma membrane 24.09 45.49
VIT_00s0532g00060.t01 Wine grape plasma membrane 39.58 45.2
AT1G11540.2 Thale cress plasma membrane 37.67 43.78
AT4G21250.1 Thale cress plasma membrane 37.48 43.65
HORVU3Hr1G077530.9 Barley plasma membrane 38.62 43.44
AT1G61740.1 Thale cress plasma membrane 37.86 43.23
Bra013516.1-P Field mustard plasma membrane 32.5 42.93
CDY61959 Canola plasma membrane 37.28 42.48
CDX82815 Canola plasma membrane 33.46 42.37
CDX79051 Canola plasma membrane 33.46 42.37
CDY12912 Canola plasma membrane 37.09 42.27
KRH49901 Soybean plasma membrane 37.86 41.86
Bra027077.1-P Field mustard plasma membrane 36.71 41.83
Bra031401.1-P Field mustard plasma membrane 36.71 41.74
CDY52324 Canola plasma membrane 36.71 41.74
Solyc02g079980.2.1 Tomato plasma membrane 36.33 41.39
PGSC0003DMT400055932 Potato plasma membrane 36.52 41.34
Solyc03g031530.2.1 Tomato plasma membrane 35.95 41.32
KRH41998 Soybean plasma membrane 37.28 41.23
KRH21651 Soybean plasma membrane 36.52 40.55
AT4G21260.1 Thale cress plasma membrane 27.92 37.15
CDY25317 Canola plasma membrane 20.27 35.1
KXG35453 Sorghum plasma membrane 26.0 29.25
KXG35452 Sorghum plasma membrane 23.14 29.02
EER96605 Sorghum plasma membrane 25.43 28.3
EER90953 Sorghum plasma membrane 24.67 26.76
Protein Annotations
EnsemblPlants:OQU87698EnsemblPlantsGene:SORBI_3003G320600GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:TM_pro_TauE-like
PANTHER:PTHR14255PANTHER:PTHR14255:SF10PFAM:PF01925ProteinID:OQU87698ProteinID:OQU87698.1SEG:seg
SignalP:SignalP-TMTMHMM:TMhelixUniParc:UPI0009DC8AC2UniProt:A0A1W0VZY2MapMan:24.2.6.2:
Description
hypothetical protein
Coordinates
chr3:-:64829307..64833295
Molecular Weight (calculated)
54790.4 Da
IEP (calculated)
9.150
GRAVY (calculated)
0.592
Length
523 amino acids
Sequence
(BLAST)
001: MSLSIFLMTL QNFFLCVLTQ LVRQDSSRIK VEPQTYLLSV PRSKQSTKPT MTRTTQLFPL VGAAIAVSFL SAAAASNTTT SSLQSLLAEV SQWRETQLGD
101: PSSSPGGGAA HAGVRPNIVA SWVLSFLAAS VSSAGGVGGG SLFLPILNLV AGLGLKRATA YSSFMVTGGA ASNVLYNLAS RSSTGTGGGG RLIDYDIALL
201: FQPCLLLGVS IGVVCNVVFP EWLITLLFSV FLASCTAKTC RAGVKIWRSE SGGAGTARGD HHHGIGKEPL LLRLPLGTSD GDAEGGGRGN GAGFPWADVA
301: LLVMVWLCFF ALHVLIGDKH GKGVIRIRPC SVAYWLITLS QLPAAVAFTG YIIHSKRKKR VVPSQEDGKQ EDLVDTGVET TLPSLTLPLA AFVTGALSGL
401: FGIGGGLLLN PVLLQIGIPP QTAAATSSFM VLFCASMSMV QFILLGVEGI GQASIYAGIC FVASVVGVVV IQRAIRKSGR VSLIVFLVTA IMALSTVIVT
501: CFGALDVWMQ YTSGEYMGFK LLC
Best Arabidopsis Sequence Match ( AT4G21250.1 )
(BLAST)
001: MKTLFVLFLL LLCVFAINAN QEEENLPQSH HNLLHKVQQW RTSLKESSAA ELKLSSAIIM AGVLCFLAAL ISSAGGIGGG GLFIPIMTIV AGVDLKTASS
101: FSAFMVTGGS IANVISNLFG GKALLDYDLA LLLEPCMLLG VSIGVICNRV LPEWLITVLF AVFLAWSSLK TCRSGVKFWK LESEIARESG HGRPERGQGQ
201: IEEETKNLKA PLLEAQATKN KSKIPWTKLG VLVIVWASFF VIYLLRGNKD GKGIITIKPC GVEYWILLSL QIPLALIFTK LALSRTESRQ EQSPNDQKNQ
301: EGTRLDKSTR LKFPAMSFLA GLLGGIFGIG GGMLISPLLL QSGIPPQITA ATTSFMVFFS ATMSAVQYLL LGMQNTDTAY VFSFICFLAS LLGLVLVQKA
401: VAQFGRASII VFSVGTVMSL STVLMTSFGA LDVWTDYVAG KDMGFKLPC
Arabidopsis Description
Sulfite exporter TauE/SafE family protein 5 [Source:UniProtKB/Swiss-Prot;Acc:F4JIP9]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.