Factsheet for PGSC0003DMT400055932

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	golgi, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400075691

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G61740.1	PGSC0003DMT400075691	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g079980.2.1	Tomato	plasma membrane	95.45	96.08
VIT_00s0532g00060.t01	Wine grape	plasma membrane	60.17	60.7
KRH41998	Soybean	plasma membrane	59.96	58.56
KRH21651	Soybean	plasma membrane	59.52	58.39
KRH49901	Soybean	plasma membrane	59.74	58.35
AT1G61740.1	Thale cress	plasma membrane	56.06	56.55
AT4G21250.1	Thale cress	plasma membrane	54.76	56.35
CDY12912	Canola	plasma membrane	55.84	56.21
Bra027077.1-P	Field mustard	plasma membrane	55.63	55.99
CDY61959	Canola	plasma membrane	54.76	55.12
Bra013516.1-P	Field mustard	plasma membrane	46.97	54.8
Bra031401.1-P	Field mustard	plasma membrane	54.55	54.78
CDY52324	Canola	plasma membrane	54.33	54.57
CDX79051	Canola	plasma membrane	47.84	53.51
CDX82815	Canola	plasma membrane	47.62	53.27
AT1G11540.2	Thale cress	plasma membrane	50.43	51.78
AT4G21260.1	Thale cress	plasma membrane	40.69	47.84
CDY25317	Canola	plasma membrane	29.65	45.36
Os01t0786700-00	Rice	plasma membrane	37.88	44.08
Os01t0786800-01	Rice	plasma membrane	40.69	43.32
GSMUA_Achr4P33580_001	Banana	golgi, plasma membrane, plastid	18.4	42.93
GSMUA_Achr6P00570_001	Banana	plasma membrane	43.07	42.7
TraesCS4A01G424800.1	Wheat	plasma membrane	19.05	42.51
EER96273	Sorghum	plasma membrane	39.39	42.13
Zm00001d043240_P002	Maize	plasma membrane	40.48	40.74
TraesCS7D01G059100.1	Wheat	plasma membrane, plastid	37.88	40.6
HORVU7Hr1G012180.2	Barley	plastid	37.88	40.42
TraesCS3A01G324800.1	Wheat	plasma membrane	39.83	40.09
TraesCS3D01G318100.1	Wheat	plasma membrane	40.48	39.79
TraesCS3B01G353800.1	Wheat	plasma membrane	40.26	39.66
GSMUA_Achr4P33570_001	Banana	extracellular, plasma membrane	23.38	38.99
TraesCS7A01G064300.1	Wheat	plasma membrane, plastid	36.36	38.27
OQU87698	Sorghum	plasma membrane	41.34	36.52
HORVU3Hr1G077570.1	Barley	peroxisome	21.86	30.61
PGSC0003DMT400019612	Potato	golgi, plasma membrane, vacuole	27.49	27.08
PGSC0003DMT400006523	Potato	golgi, plasma membrane, vacuole	27.92	26.71
PGSC0003DMT400047828	Potato	plasma membrane	27.06	26.21
PGSC0003DMT400007068	Potato	plasma membrane	25.11	25.27
PGSC0003DMT400038560	Potato	plasma membrane	25.97	25.21
PGSC0003DMT400028090	Potato	plasma membrane	25.97	25.21
PGSC0003DMT400019603	Potato	plasma membrane	22.08	23.56
HORVU3Hr1G077530.9	Barley	plasma membrane	22.08	21.94

Protein Annotations

EnsemblPlants:PGSC0003DMT400055932	EnsemblPlantsGene:PGSC0003DMG400021728	EntrezGene:102604949	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:TM_pro_TauE-like	PANTHER:PTHR14255	PANTHER:PTHR14255:SF3	PFAM:PF01925	PGSC:PGSC0003DMG400021728	RefSeq:XP_006365887.1
SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002959173	UniProt:M1BYS3	MapMan:24.2.6.2

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400021728]

Coordinates

chr2:-:35678544..35681073

Molecular Weight (calculated)

50476.3 Da

IEP (calculated)

6.638

GRAVY (calculated)

0.529

Length

462 amino acids

Sequence
(BLAST)

001: MNCHNNYLKF IFFLVFLASC RFSIAKQTNP TSDIPKLDQF LNAIYEWRAN QKQKQEDVGL KFGVSTVAAG VLCFLAASIS SAGGIGGGGL YVPILTIIAG
101: VDLKTASSFS AFMVTGGSIA NVVTNMFVKS TKYGGKILID FDIALLSEPC MLLGVSIGVI CNRVLPEWLI TILFALFLGF CTFKTCKSGF FYWKLESELE
201: NGKQELENGL LKNESCDEDD EALLEKKEGK GGVVSNIPWM KMGMLVMFWF SFFFLYLLRG NQYGQGIIPM EACGVGYWII SSVQFPMAII FTSWILYNRE
301: SQQNMPSKKP EGTSETKHGP SGKLIFPIMA LLAGVLGGVF GIGGGMLISP LLIQVGITPE VTAATCSFMV FFSSTMSAVQ YLFLGMEHVD DALIFAVVCC
401: IASIIGLVVV QRAIEHHGRA SLIVFSVGIV MALSTLLMTS FGAVDIWRDY ISGNYMGFKQ PC

Best Arabidopsis Sequence Match ( AT1G61740.1 )
(BLAST)

001: MRNNFVPIIL SFIIFLTPSI AEQEPSILSP VDQLLNKTSS YLDFSTKFNQ PRIELTTSTI IAGLLSFLAS SISSAGGIGG GGLYVPIMTI VAGLDLKTAS
101: SFSAFMVTGG SIANVGCNLF VRNPKSGGKT LIDFDLALLL EPCMLLGVSI GVICNLVFPN WLITSLFAVF LAWSTLKTFG NGLYYWRLES EMVKIRESNR
201: IEEDDEEDKI ESLKLPLLED YQRPKRFPWI KLGVLVIIWL SYFAVYLLRG NKYGEGIISI EPCGNAYWLI SSSQIPLTLF FTLWICFSDN VQSQQQSDYH
301: VSVKDVEDLR SNDGARSNKC MFPVMALLAG VLGGVFGIGG GMLISPLLLQ VGIAPEVTAA TCSFMVLFSS TMSAIQYLLL GMEHTGTASI FAVICFVASL
401: VGLKVVQKVI TEYGRASIIV FSVGIVMALS IVLMTSYGAL DVWNDYVSGR YMGFKLPC

Arabidopsis Description

Sulfite exporter TauE/SafE family protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYB0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.