Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P05510_001 | Banana | nucleus | 38.66 | 50.0 |
| GSMUA_Achr6P04440_001 | Banana | nucleus | 69.75 | 47.7 |
| GSMUA_Achr2P17810_001 | Banana | nucleus | 68.07 | 42.19 |
| GSMUA_Achr1P15350_001 | Banana | nucleus | 40.34 | 40.34 |
| GSMUA_Achr4P12070_001 | Banana | nucleus | 42.02 | 39.37 |
| GSMUA_Achr5P12530_001 | Banana | nucleus | 52.94 | 31.5 |
| GSMUA_Achr3P15550_001 | Banana | nucleus | 47.9 | 31.15 |
| GSMUA_Achr6P27040_001 | Banana | nucleus | 43.7 | 30.59 |
| GSMUA_Achr1P00490_001 | Banana | nucleus | 48.74 | 28.29 |
| GSMUA_Achr11P... | Banana | nucleus | 44.54 | 27.89 |
| GSMUA_Achr1P00480_001 | Banana | nucleus | 43.7 | 26.53 |
| GSMUA_Achr11P... | Banana | nucleus | 58.82 | 26.12 |
| GSMUA_Achr2P10490_001 | Banana | nucleus | 45.38 | 22.98 |
| GSMUA_Achr7P06910_001 | Banana | nucleus | 45.38 | 22.88 |
| GSMUA_Achr5P21050_001 | Banana | nucleus | 59.66 | 21.45 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF-transcript_factor | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | ncoils:Coil |
| InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr5G24680_001 |
| EnsemblPlants:GSMUA_Achr5P24680_001 | EnsemblPlants:GSMUA_Achr5T24680_001 | InterPro:IPR001471 | InterPro:IPR036955 | UniProt:M0T1E3 | PFAM:PF00847 |
| PIRSF:PIRSF038123 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI000295E1DD | SEG:seg | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G24680_001]
Coordinates
chr5:-:25991140..25991499
Molecular Weight (calculated)
12971.6 Da
IEP (calculated)
12.314
GRAVY (calculated)
-0.592
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPPPAPFPA RERGRNYRGV RQRPWGKFAA EIRDPGRNGA RVWLGTFSTA EEAAIAYDRA AFRIRGSRAL LNFPLLIGSQ GTPPPPSTLP PLSGNKRRKR
101: VAALASSTGT AEPERLVRA
101: VAALASSTGT AEPERLVRA
001: MSMTADSQSD YAFLESIRRH LLGESEPILS ESTASSVTQS CVTGQSIKPV YGRNPSFSKL YPCFTESWGD LPLKENDSED MLVYGILNDA FHGGWEPSSS
101: SSDEDRSSFP SVKIETPESF AAVDSVPVKK EKTSPVSAAV TAAKGKHYRG VRQRPWGKFA AEIRDPAKNG ARVWLGTFET AEDAALAYDR AAFRMRGSRA
201: LLNFPLRVNS GEPDPVRIKS KRSSFSSSNE NGAPKKRRTV AAGGGMDKGL TVKCEVVEVA RGDRLLVL
101: SSDEDRSSFP SVKIETPESF AAVDSVPVKK EKTSPVSAAV TAAKGKHYRG VRQRPWGKFA AEIRDPAKNG ARVWLGTFET AEDAALAYDR AAFRMRGSRA
201: LLNFPLRVNS GEPDPVRIKS KRSSFSSSNE NGAPKKRRTV AAGGGMDKGL TVKCEVVEVA RGDRLLVL
Arabidopsis Description
ERF1AEthylene-responsive transcription factor 1A [Source:UniProtKB/Swiss-Prot;Acc:O80337]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.