Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr2P19320_001 | |
| GSMUA_Achr5P06640_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61600.1 | GSMUA_Achr10P... | AT2G43790.1 | 19416906 |
| AT5G61600.1 | GSMUA_Achr2P19320_001 | AT2G43790.1 | 19416906 |
| AT5G61600.1 | GSMUA_Achr5P06640_001 | AT2G43790.1 | 19416906 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P05510_001 | Banana | nucleus | 24.74 | 51.09 |
| GSMUA_Achr5P24680_001 | Banana | nucleus | 27.89 | 44.54 |
| GSMUA_Achr1P00480_001 | Banana | nucleus | 44.74 | 43.37 |
| GSMUA_Achr2P10490_001 | Banana | nucleus | 48.95 | 39.57 |
| GSMUA_Achr1P15350_001 | Banana | nucleus | 24.74 | 39.5 |
| GSMUA_Achr4P12070_001 | Banana | nucleus | 24.74 | 37.01 |
| GSMUA_Achr7P06910_001 | Banana | nucleus | 43.16 | 34.75 |
| Zm00001d029940_P001 | Maize | nucleus | 42.11 | 33.2 |
| HORVU6Hr1G062430.1 | Barley | nucleus | 48.95 | 30.69 |
| Bra035732.1-P | Field mustard | nucleus | 34.21 | 29.95 |
| GSMUA_Achr6P04440_001 | Banana | nucleus | 27.37 | 29.89 |
| TraesCS6B01G280800.1 | Wheat | nucleus | 50.0 | 29.87 |
| GSMUA_Achr2P17810_001 | Banana | nucleus | 30.0 | 29.69 |
| TraesCS1A01G218100.1 | Wheat | nucleus | 36.84 | 29.66 |
| CDX71695 | Canola | nucleus | 34.21 | 29.55 |
| CDY05842 | Canola | nucleus | 34.21 | 29.55 |
| VIT_16s0013g01110.t01 | Wine grape | nucleus | 37.37 | 29.46 |
| VIT_16s0013g01120.t01 | Wine grape | nucleus, plastid | 37.37 | 29.34 |
| OQU92128 | Sorghum | nucleus | 42.63 | 29.24 |
| TraesCS6A01G243500.1 | Wheat | nucleus | 48.95 | 29.06 |
| TraesCS6D01G225700.1 | Wheat | nucleus | 48.42 | 29.02 |
| HORVU1Hr1G055710.1 | Barley | nucleus | 36.84 | 28.93 |
| GSMUA_Achr5P12530_001 | Banana | nucleus | 30.0 | 28.5 |
| Os04t0547600-01 | Rice | nucleus | 48.95 | 28.35 |
| Zm00001d017466_P001 | Maize | nucleus | 48.95 | 28.27 |
| AT5G51190.1 | Thale cress | nucleus | 32.63 | 28.05 |
| Os02t0655200-02 | Rice | nucleus | 50.53 | 27.91 |
| GSMUA_Achr1P00490_001 | Banana | nucleus | 30.0 | 27.8 |
| TraesCS1B01G231500.1 | Wheat | nucleus | 37.37 | 27.73 |
| GSMUA_Achr6P27040_001 | Banana | nucleus | 24.74 | 27.65 |
| Zm00001d002761_P001 | Maize | nucleus | 45.79 | 27.62 |
| VIT_16s0013g00900.t01 | Wine grape | nucleus | 33.16 | 27.51 |
| Solyc03g093540.1.1 | Tomato | nucleus | 32.63 | 27.19 |
| TraesCS2B01G436200.1 | Wheat | nucleus | 47.89 | 27.16 |
| EES11211 | Sorghum | nucleus | 45.79 | 26.93 |
| Bra028690.1-P | Field mustard | nucleus | 25.79 | 26.92 |
| CDY40779 | Canola | nucleus | 25.79 | 26.92 |
| TraesCS2A01G417200.1 | Wheat | nucleus | 47.37 | 26.79 |
| TraesCS2D01G414500.1 | Wheat | nucleus | 47.37 | 26.79 |
| GSMUA_Achr3P15550_001 | Banana | nucleus | 25.79 | 26.78 |
| TraesCS2B01G436100.1 | Wheat | nucleus | 47.89 | 26.69 |
| EES11214 | Sorghum | nucleus | 40.0 | 26.67 |
| TraesCS2A01G417100.1 | Wheat | nucleus | 47.89 | 26.38 |
| KXG31094 | Sorghum | nucleus | 47.37 | 26.32 |
| Solyc03g093550.1.1 | Tomato | nucleus | 33.16 | 26.14 |
| VIT_16s0013g01090.t01 | Wine grape | nucleus | 36.32 | 26.14 |
| KXG26835 | Sorghum | nucleus | 45.79 | 26.05 |
| TraesCS2D01G414300.1 | Wheat | nucleus | 46.84 | 25.95 |
| Solyc05g052030.1.1 | Tomato | nucleus | 27.37 | 25.87 |
| Zm00001d051340_P001 | Maize | nucleus | 46.32 | 25.73 |
| PGSC0003DMT400090475 | Potato | nucleus | 33.16 | 25.71 |
| Zm00001d002760_P001 | Maize | nucleus | 47.89 | 25.56 |
| KRH34607 | Soybean | nucleus | 26.84 | 25.37 |
| VIT_16s0013g01000.t01 | Wine grape | nucleus | 35.79 | 25.37 |
| KRH28164 | Soybean | nucleus | 36.84 | 25.36 |
| PGSC0003DMT400027937 | Potato | nucleus | 33.68 | 25.3 |
| PGSC0003DMT400041328 | Potato | nucleus | 27.37 | 25.24 |
| KXG26836 | Sorghum | nucleus | 46.84 | 25.21 |
| CDY38399 | Canola | nucleus | 34.21 | 25.19 |
| KRG92180 | Soybean | nucleus | 26.32 | 25.13 |
| CDY64687 | Canola | nucleus | 37.89 | 25.09 |
| Solyc03g093560.1.1 | Tomato | nucleus | 32.11 | 25.0 |
| CDY41042 | Canola | nucleus | 38.42 | 24.91 |
| PGSC0003DMT400086995 | Potato | nucleus | 32.11 | 24.9 |
| AT5G61590.1 | Thale cress | nucleus | 26.32 | 24.88 |
| CDY60497 | Canola | nucleus | 26.84 | 24.76 |
| KRH77324 | Soybean | nucleus | 35.79 | 24.73 |
| CDY25977 | Canola | nucleus | 38.42 | 24.66 |
| CDY42869 | Canola | nucleus | 28.42 | 24.66 |
| Bra009250.1-P | Field mustard | nucleus | 27.37 | 24.64 |
| CDY64666 | Canola | nucleus | 27.37 | 24.64 |
| AT5G07580.1 | Thale cress | golgi, nucleus, plastid | 26.84 | 24.64 |
| VIT_16s0013g00990.t01 | Wine grape | nucleus | 35.79 | 24.46 |
| Bra040158.1-P | Field mustard | nucleus | 34.21 | 24.44 |
| CDY64966 | Canola | nucleus | 34.21 | 24.44 |
| Bra024953.1-P | Field mustard | nucleus | 37.89 | 24.41 |
| VIT_16s0013g00980.t01 | Wine grape | nucleus | 35.26 | 24.36 |
| VIT_16s0013g01070.t01 | Wine grape | nucleus | 35.26 | 24.36 |
| CDY14036 | Canola | nucleus | 24.21 | 24.34 |
| Bra029319.1-P | Field mustard | nucleus | 28.42 | 24.22 |
| VIT_16s0013g00950.t01 | Wine grape | nucleus | 35.26 | 24.19 |
| VIT_16s0013g01050.t01 | Wine grape | nucleus | 35.26 | 24.19 |
| VIT_16s0013g01060.t01 | Wine grape | nucleus | 35.26 | 24.19 |
| Bra017493.1-P | Field mustard | nucleus | 37.37 | 24.15 |
| AT5G47230.1 | Thale cress | nucleus | 37.89 | 24.0 |
| CDY67760 | Canola | nucleus | 28.42 | 24.0 |
| CDX76570 | Canola | nucleus | 35.26 | 23.93 |
| KRH57483 | Soybean | nucleus | 34.74 | 23.74 |
| KRG90129 | Soybean | nucleus | 33.16 | 23.68 |
| KRH04191 | Soybean | nucleus | 34.21 | 23.64 |
| KRG90130 | Soybean | nucleus | 25.79 | 23.45 |
| AT4G17490.1 | Thale cress | nucleus | 34.74 | 23.4 |
| CDY16811 | Canola | nucleus | 24.74 | 23.38 |
| PGSC0003DMT400067472 | Potato | nucleus | 34.21 | 23.38 |
| Bra012939.1-P | Field mustard | nucleus | 24.21 | 23.23 |
| CDY02130 | Canola | nucleus | 24.21 | 23.23 |
| CDY23053 | Canola | nucleus | 24.21 | 23.23 |
| CDX77755 | Canola | nucleus | 37.89 | 23.23 |
| Bra035919.1-P | Field mustard | nucleus | 24.74 | 23.15 |
| CDX87222 | Canola | nucleus | 24.21 | 22.89 |
| AT5G61600.1 | Thale cress | nucleus | 28.95 | 22.82 |
| Bra021049.1-P | Field mustard | nucleus | 33.68 | 22.78 |
| PGSC0003DMT400041327 | Potato | nucleus | 35.26 | 22.64 |
| KRH33374 | Soybean | nucleus | 33.16 | 22.42 |
| Solyc08g078190.1.1 | Tomato | nucleus | 37.89 | 22.36 |
| CDY02129 | Canola | nucleus | 28.95 | 21.91 |
| KRH33376 | Soybean | nucleus | 25.26 | 21.82 |
| OQU76347 | Sorghum | nucleus | 33.68 | 21.62 |
| CDY23052 | Canola | nucleus | 28.95 | 21.48 |
| Bra012938.1-P | Field mustard | nucleus | 28.95 | 21.32 |
| GSMUA_Achr11P... | Banana | nucleus | 30.0 | 21.27 |
| CDY27922 | Canola | nucleus | 20.0 | 20.0 |
| VIT_16s0013g00970.t01 | Wine grape | nucleus | 32.63 | 19.62 |
| Solyc05g052040.1.1 | Tomato | nucleus | 36.32 | 18.9 |
| HORVU2Hr1G098140.2 | Barley | mitochondrion, nucleus | 33.16 | 17.6 |
| GSMUA_Achr5P21050_001 | Banana | nucleus | 30.0 | 17.22 |
| VIT_16s0013g01030.t01 | Wine grape | cytosol | 7.89 | 13.51 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr11G16200_001 | EnsemblPlants:GSMUA_Achr11P16200_001 | EnsemblPlants:GSMUA_Achr11T16200_001 |
| InterPro:IPR001471 | InterPro:IPR036955 | UniProt:M0RSQ0 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31677 | PANTHER:PTHR31677:SF43 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI000294DFC8 | SEG:seg |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr11G16200_001]
Coordinates
chr11:+:17875730..17876302
Molecular Weight (calculated)
20667.9 Da
IEP (calculated)
5.886
GRAVY (calculated)
-0.661
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHHLGVDDS STLDFFPHQL HAADFESLLA DLPPSSTPPP LHYAAVEPTL SMPLPPAPFA ESWPRESAGV SSEAEDQAVG RRYRGVRQRP WGKFAAEIRD
101: PNRRGSRIWL GTYSTALEAA RAYDRAAFRM RGCRAILNFP NEVGRSEHRH PPVTDNEVGV GRDGGGEDGE SSGAAGIEGG RRPEGNPFAV
101: PNRRGSRIWL GTYSTALEAA RAYDRAAFRM RGCRAILNFP NEVGRSEHRH PPVTDNEVGV GRDGGGEDGE SSGAAGIEGG RRPEGNPFAV
001: MATPNEVSAL WFIEKHLLDE ASPVATDPWM KHESSSATES SSDSSSIIFG SSSSSFAPID FSESVCKPEI IDLDTPRSME FLSIPFEFDS EVSVSDFDFK
101: PSNQNQNQFE PELKSQIRKP PLKISLPAKT EWIQFAAENT KPEVTKPVSE EEKKHYRGVR QRPWGKFAAE IRDPNKRGSR VWLGTFDTAI EAARAYDEAA
201: FRLRGSKAIL NFPLEVGKWK PRADEGEKKR KRDDDEKVTV VEKVLKTEQS VDVNGGETFP FVTSNLTELC DWDLTGFLNF PLLSPLSPHP PFGYSQLTVV
101: PSNQNQNQFE PELKSQIRKP PLKISLPAKT EWIQFAAENT KPEVTKPVSE EEKKHYRGVR QRPWGKFAAE IRDPNKRGSR VWLGTFDTAI EAARAYDEAA
201: FRLRGSKAIL NFPLEVGKWK PRADEGEKKR KRDDDEKVTV VEKVLKTEQS VDVNGGETFP FVTSNLTELC DWDLTGFLNF PLLSPLSPHP PFGYSQLTVV
Arabidopsis Description
ERF5ERF5 [Source:UniProtKB/TrEMBL;Acc:A0A178UKK9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.