Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
23599278
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr2P19320_001 | |
| GSMUA_Achr5P06640_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61600.1 | GSMUA_Achr10P... | AT2G43790.1 | 19416906 |
| AT5G61600.1 | GSMUA_Achr2P19320_001 | AT2G43790.1 | 19416906 |
| AT5G61600.1 | GSMUA_Achr5P06640_001 | AT2G43790.1 | 19416906 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P00480_001 | Banana | nucleus | 52.12 | 62.76 |
| GSMUA_Achr4P05510_001 | Banana | nucleus | 21.61 | 55.43 |
| GSMUA_Achr2P10490_001 | Banana | nucleus | 52.12 | 52.34 |
| GSMUA_Achr5P24680_001 | Banana | nucleus | 22.88 | 45.38 |
| GSMUA_Achr1P15350_001 | Banana | nucleus | 22.88 | 45.38 |
| Bra035732.1-P | Field mustard | nucleus | 39.83 | 43.32 |
| GSMUA_Achr11P... | Banana | nucleus | 34.75 | 43.16 |
| CDY05842 | Canola | nucleus | 39.83 | 42.73 |
| CDX71695 | Canola | nucleus | 39.41 | 42.27 |
| VIT_16s0013g01110.t01 | Wine grape | nucleus | 41.1 | 40.25 |
| GSMUA_Achr4P12070_001 | Banana | nucleus | 21.61 | 40.16 |
| AT5G51190.1 | Thale cress | nucleus | 37.29 | 39.82 |
| VIT_16s0013g00900.t01 | Wine grape | nucleus | 38.56 | 39.74 |
| VIT_16s0013g01120.t01 | Wine grape | nucleus, plastid | 39.83 | 38.84 |
| Solyc03g093560.1.1 | Tomato | nucleus | 38.14 | 36.89 |
| Solyc03g093550.1.1 | Tomato | nucleus | 37.29 | 36.51 |
| PGSC0003DMT400027937 | Potato | nucleus | 38.98 | 36.36 |
| Solyc03g093540.1.1 | Tomato | nucleus | 34.75 | 35.96 |
| KRH28164 | Soybean | nucleus | 41.95 | 35.87 |
| VIT_16s0013g01000.t01 | Wine grape | nucleus | 40.68 | 35.82 |
| KRH77324 | Soybean | nucleus | 41.53 | 35.64 |
| PGSC0003DMT400090475 | Potato | nucleus | 36.86 | 35.51 |
| VIT_16s0013g01030.t01 | Wine grape | cytosol | 16.53 | 35.14 |
| PGSC0003DMT400086995 | Potato | nucleus | 36.44 | 35.1 |
| VIT_16s0013g01060.t01 | Wine grape | nucleus | 40.68 | 34.66 |
| VIT_16s0013g01050.t01 | Wine grape | nucleus | 40.25 | 34.3 |
| VIT_16s0013g01070.t01 | Wine grape | nucleus | 39.41 | 33.82 |
| VIT_16s0013g00990.t01 | Wine grape | nucleus | 39.83 | 33.81 |
| CDY38399 | Canola | nucleus | 36.86 | 33.72 |
| VIT_16s0013g01090.t01 | Wine grape | nucleus | 37.29 | 33.33 |
| VIT_16s0013g00950.t01 | Wine grape | nucleus | 38.98 | 33.21 |
| PGSC0003DMT400041327 | Potato | nucleus | 41.53 | 33.11 |
| VIT_16s0013g00980.t01 | Wine grape | nucleus | 38.56 | 33.09 |
| CDY64966 | Canola | nucleus | 36.86 | 32.71 |
| KRG90129 | Soybean | nucleus | 36.86 | 32.71 |
| Bra040158.1-P | Field mustard | nucleus | 36.86 | 32.71 |
| CDY40779 | Canola | nucleus | 25.0 | 32.42 |
| Bra028690.1-P | Field mustard | nucleus | 25.0 | 32.42 |
| KRH57483 | Soybean | nucleus | 38.14 | 32.37 |
| KRH04191 | Soybean | nucleus | 37.71 | 32.36 |
| GSMUA_Achr6P04440_001 | Banana | nucleus | 23.73 | 32.18 |
| GSMUA_Achr2P17810_001 | Banana | nucleus | 25.85 | 31.77 |
| GSMUA_Achr5P12530_001 | Banana | nucleus | 26.69 | 31.5 |
| CDY64687 | Canola | nucleus | 38.14 | 31.36 |
| CDX76570 | Canola | nucleus | 36.44 | 30.71 |
| KRH33374 | Soybean | nucleus | 36.44 | 30.61 |
| PGSC0003DMT400067472 | Potato | nucleus | 36.02 | 30.58 |
| Bra024953.1-P | Field mustard | nucleus | 38.14 | 30.51 |
| GSMUA_Achr1P00490_001 | Banana | nucleus | 26.27 | 30.24 |
| CDY14036 | Canola | nucleus | 24.15 | 30.16 |
| AT5G47230.1 | Thale cress | nucleus | 38.14 | 30.0 |
| CDY27922 | Canola | nucleus | 24.15 | 30.0 |
| Solyc05g052030.1.1 | Tomato | nucleus | 25.42 | 29.85 |
| AT4G17490.1 | Thale cress | nucleus | 35.59 | 29.79 |
| CDY41042 | Canola | nucleus | 36.86 | 29.69 |
| KRG90130 | Soybean | nucleus | 26.27 | 29.67 |
| Bra017493.1-P | Field mustard | nucleus | 36.86 | 29.59 |
| Bra021049.1-P | Field mustard | nucleus | 35.17 | 29.54 |
| GSMUA_Achr6P27040_001 | Banana | nucleus | 21.19 | 29.41 |
| CDY25977 | Canola | nucleus | 36.86 | 29.39 |
| KRG92180 | Soybean | nucleus | 24.58 | 29.15 |
| PGSC0003DMT400041328 | Potato | nucleus | 25.42 | 29.13 |
| KRH34607 | Soybean | nucleus | 24.58 | 28.86 |
| CDY42869 | Canola | nucleus | 26.69 | 28.77 |
| CDX77755 | Canola | nucleus | 37.71 | 28.71 |
| CDY60497 | Canola | nucleus | 25.0 | 28.64 |
| Solyc08g078190.1.1 | Tomato | nucleus | 38.98 | 28.57 |
| Bra029319.1-P | Field mustard | nucleus | 26.69 | 28.25 |
| AT5G07580.1 | Thale cress | golgi, nucleus, plastid | 24.58 | 28.02 |
| CDY67760 | Canola | nucleus | 26.69 | 28.0 |
| CDY64666 | Canola | nucleus | 25.0 | 27.96 |
| Bra009250.1-P | Field mustard | nucleus | 25.0 | 27.96 |
| GSMUA_Achr3P15550_001 | Banana | nucleus | 21.61 | 27.87 |
| KRH33376 | Soybean | nucleus | 25.85 | 27.73 |
| AT5G61600.1 | Thale cress | nucleus | 27.97 | 27.39 |
| AT5G61590.1 | Thale cress | nucleus | 23.31 | 27.36 |
| Solyc05g052040.1.1 | Tomato | nucleus | 41.53 | 26.85 |
| CDY16811 | Canola | nucleus | 22.46 | 26.37 |
| Bra035919.1-P | Field mustard | nucleus | 22.46 | 26.11 |
| CDX87222 | Canola | nucleus | 22.03 | 25.87 |
| CDY02129 | Canola | nucleus | 27.12 | 25.5 |
| CDY23052 | Canola | nucleus | 27.54 | 25.39 |
| VIT_16s0013g00970.t01 | Wine grape | nucleus | 33.9 | 25.32 |
| Bra012939.1-P | Field mustard | nucleus | 21.19 | 25.25 |
| CDY23053 | Canola | nucleus | 21.19 | 25.25 |
| CDY02130 | Canola | nucleus | 21.19 | 25.25 |
| Bra012938.1-P | Field mustard | nucleus | 27.54 | 25.19 |
| GSMUA_Achr11P... | Banana | nucleus | 27.54 | 24.25 |
| GSMUA_Achr5P21050_001 | Banana | nucleus | 28.39 | 20.24 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr7G06910_001 | EnsemblPlants:GSMUA_Achr7P06910_001 | EnsemblPlants:GSMUA_Achr7T06910_001 |
| InterPro:IPR001471 | InterPro:IPR036955 | UniProt:M0TFD1 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31677 | PANTHER:PTHR31677:SF43 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI000296554E | SEG:seg |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G06910_001]
Coordinates
chr7:+:5067600..5068515
Molecular Weight (calculated)
25546.2 Da
IEP (calculated)
7.776
GRAVY (calculated)
-0.458
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MEASIGFDDS TLDLIRQCLL GDLPQPDSPG LAPAFPCDGA CRFPEPALGR RPSLTISVPP RPVGAAADCD ELKRYRGVRQ RPWGKFAAEI RDPARRGARV
101: WLGTYDTAVE AARAYDRAAF QMRGRKAILN FPHEIGSSEQ WDAAMTTAAQ VLSGKRKREA EEEEAARGIK RERSPATEKG GDGGFVPSMS VCPLTPSSWK
201: GVWDWEGADT KGIFNVPPLS PLSPHPSLGC AQVTVS
101: WLGTYDTAVE AARAYDRAAF QMRGRKAILN FPHEIGSSEQ WDAAMTTAAQ VLSGKRKREA EEEEAARGIK RERSPATEKG GDGGFVPSMS VCPLTPSSWK
201: GVWDWEGADT KGIFNVPPLS PLSPHPSLGC AQVTVS
001: MASSHQQQQE QDQSALDLIT QHLLTDFPSL DTFASTIHHC TTSTLSQRKP PLATIAVPTT APVVQENDQR HYRGVRRRPW GKYAAEIRDP NKKGVRVWLG
101: TFDTAMEAAR GYDKAAFKLR GSKAILNFPL EAGKHEDLGD NKKTISLKAK RKRQVTEDES QLISRKAVKR EEAQVQADAC PLTPSSWKGF WDGADSKDMG
201: IFSVPLLSPC PSLGHSQLVV T
101: TFDTAMEAAR GYDKAAFKLR GSKAILNFPL EAGKHEDLGD NKKTISLKAK RKRQVTEDES QLISRKAVKR EEAQVQADAC PLTPSSWKGF WDGADSKDMG
201: IFSVPLLSPC PSLGHSQLVV T
Arabidopsis Description
ERF105Ethylene-responsive transcription factor ERF105 [Source:UniProtKB/Swiss-Prot;Acc:Q8VY90]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.