Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61600.1 | CDX79801 | AT2G43790.1 | 19416906 |
| AT5G61600.1 | CDX83459 | AT2G43790.1 | 19416906 |
| AT5G61600.1 | CDY17911 | AT2G43790.1 | 19416906 |
| AT5G61600.1 | CDY44256 | AT2G43790.1 | 19416906 |
| AT5G61600.1 | CDY13551 | AT5G44420.1 | 19416906 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42869 | Canola | nucleus | 96.89 | 99.54 |
| Bra029319.1-P | Field mustard | nucleus | 97.78 | 98.65 |
| AT5G61600.1 | Thale cress | nucleus | 76.0 | 70.95 |
| CDY02129 | Canola | nucleus | 78.22 | 70.12 |
| CDY23052 | Canola | nucleus | 79.56 | 69.92 |
| CDX77538 | Canola | nucleus | 22.22 | 40.0 |
| CDY40779 | Canola | nucleus | 32.0 | 39.56 |
| CDY50478 | Canola | nucleus | 22.67 | 38.64 |
| CDY32941 | Canola | nucleus | 22.67 | 38.64 |
| CDY14036 | Canola | nucleus | 32.0 | 38.1 |
| CDX85071 | Canola | nucleus | 23.11 | 37.68 |
| CDX77537 | Canola | nucleus | 23.11 | 37.41 |
| CDY18225 | Canola | nucleus | 21.78 | 36.84 |
| CDY60663 | Canola | nucleus | 21.78 | 36.57 |
| CDY35516 | Canola | nucleus | 22.22 | 36.23 |
| CDY53187 | Canola | nucleus | 21.33 | 35.56 |
| CDY10057 | Canola | nucleus | 21.33 | 35.56 |
| CDX85070 | Canola | nucleus | 21.78 | 35.51 |
| CDY60497 | Canola | nucleus | 32.44 | 35.44 |
| CDY64666 | Canola | nucleus | 32.44 | 34.6 |
| CDY38052 | Canola | nucleus | 24.89 | 33.73 |
| GSMUA_Achr1P00480_001 | Banana | nucleus | 29.33 | 33.67 |
| CDY16811 | Canola | nucleus | 28.89 | 32.34 |
| CDY02130 | Canola | nucleus | 28.44 | 32.32 |
| CDY23053 | Canola | nucleus | 28.0 | 31.82 |
| CDX87222 | Canola | nucleus | 28.0 | 31.34 |
| CDX71695 | Canola | nucleus | 29.33 | 30.0 |
| CDY05842 | Canola | nucleus | 29.33 | 30.0 |
| GSMUA_Achr11P... | Banana | nucleus | 24.0 | 28.42 |
| Zm00001d029940_P001 | Maize | nucleus | 30.22 | 28.22 |
| HORVU1Hr1G055710.1 | Barley | nucleus | 29.78 | 27.69 |
| GSMUA_Achr2P10490_001 | Banana | nucleus | 28.89 | 27.66 |
| TraesCS1A01G218100.1 | Wheat | nucleus | 28.89 | 27.54 |
| CDY35515 | Canola | nucleus | 19.11 | 26.88 |
| GSMUA_Achr7P06910_001 | Banana | nucleus | 28.0 | 26.69 |
| CDX76569 | Canola | nucleus | 21.33 | 26.67 |
| CDY33523 | Canola | nucleus | 25.33 | 26.39 |
| TraesCS1B01G231500.1 | Wheat | nucleus | 29.33 | 25.78 |
| CDX77750 | Canola | nucleus | 25.33 | 25.68 |
| CDY38401 | Canola | nucleus | 25.33 | 25.11 |
| OQU92128 | Sorghum | nucleus | 30.67 | 24.91 |
| CDY65883 | Canola | nucleus | 24.89 | 24.89 |
| CDY08986 | Canola | nucleus | 23.11 | 24.53 |
| CDY68787 | Canola | nucleus | 24.44 | 24.44 |
| CDY38399 | Canola | nucleus | 28.0 | 24.42 |
| CDY28965 | Canola | nucleus | 24.44 | 23.91 |
| CDY41042 | Canola | nucleus | 31.11 | 23.89 |
| CDY64687 | Canola | nucleus | 29.78 | 23.34 |
| CDY25977 | Canola | nucleus | 30.67 | 23.31 |
| CDY64966 | Canola | nucleus | 27.11 | 22.93 |
| CDX76570 | Canola | nucleus | 28.44 | 22.86 |
| CDY43434 | Canola | nucleus | 23.11 | 22.81 |
| CDY25978 | Canola | nucleus | 23.56 | 22.08 |
| CDY56473 | Canola | nucleus | 22.67 | 22.08 |
| CDY30489 | Canola | nucleus | 22.67 | 21.98 |
| CDX74692 | Canola | nucleus | 22.67 | 21.98 |
| CDY27923 | Canola | nucleus | 24.89 | 21.96 |
| CDX77755 | Canola | nucleus | 29.78 | 21.61 |
| Zm00001d002761_P001 | Maize | nucleus | 30.22 | 21.59 |
| CDY27922 | Canola | nucleus | 18.22 | 21.58 |
| CDY23459 | Canola | nucleus | 22.67 | 21.52 |
| EES11214 | Sorghum | nucleus | 25.78 | 20.35 |
| EES11211 | Sorghum | nucleus | 28.89 | 20.12 |
| Os04t0547600-01 | Rice | nucleus | 29.33 | 20.12 |
| TraesCS2A01G417200.1 | Wheat | nucleus | 29.78 | 19.94 |
| KXG26835 | Sorghum | nucleus | 28.89 | 19.46 |
| Zm00001d017466_P001 | Maize | nucleus | 28.44 | 19.45 |
| Zm00001d002760_P001 | Maize | nucleus | 30.67 | 19.38 |
| TraesCS2B01G436100.1 | Wheat | nucleus | 29.33 | 19.35 |
| TraesCS2D01G414300.1 | Wheat | nucleus | 29.33 | 19.24 |
| HORVU6Hr1G062430.1 | Barley | nucleus | 25.78 | 19.14 |
| TraesCS2A01G417100.1 | Wheat | nucleus | 29.33 | 19.13 |
| TraesCS2B01G436200.1 | Wheat | nucleus | 28.44 | 19.1 |
| TraesCS2D01G414500.1 | Wheat | nucleus | 28.44 | 19.05 |
| KXG26836 | Sorghum | nucleus | 29.78 | 18.98 |
| TraesCS6D01G225700.1 | Wheat | nucleus | 26.22 | 18.61 |
| TraesCS6B01G280800.1 | Wheat | nucleus | 26.22 | 18.55 |
| TraesCS6A01G243500.1 | Wheat | nucleus | 26.22 | 18.44 |
| OQU76347 | Sorghum | nucleus | 24.0 | 18.24 |
| Zm00001d051340_P001 | Maize | nucleus | 27.56 | 18.13 |
| KXG31094 | Sorghum | nucleus | 27.56 | 18.13 |
| Os02t0655200-02 | Rice | nucleus | 26.67 | 17.44 |
| HORVU2Hr1G098140.2 | Barley | mitochondrion, nucleus | 18.67 | 11.73 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078JMW4 | UniProt:A0A078JMW4 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDY67760 | ProteinID:CDY67760 | ProteinID:CDY67760.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00066786001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31677 | PANTHER:PTHR31677:SF43 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EF0653 | SEG:seg | : | : | : | : |
Description
BnaC02g48800DBnaC02g48800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JMW4]
Coordinates
chrLK036484:+:2142..2895
Molecular Weight (calculated)
25131.5 Da
IEP (calculated)
7.167
GRAVY (calculated)
-0.713
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MATKQEALAI EFISQHLLTD FASQDHHLHS ETTPRTIGNH NPKPNSTLNR RKPPLPNLSV PVSSTMKKPE EEEEEEEEEK RHYRGVRRRP WGKYAAEIRD
101: PNKKGSRLWL GTYDTAVEAA RAYDLAAFEL RGRKAILNFP LDVRATSESC FVGLGKRKRL KSFVAEEETV PVRVKAEEKE SDTTVAEVEA VPLTPSSWKG
201: VWDLGAGDGI FSVPPLTPTS PSSAT
101: PNKKGSRLWL GTYDTAVEAA RAYDLAAFEL RGRKAILNFP LDVRATSESC FVGLGKRKRL KSFVAEEETV PVRVKAEEKE SDTTVAEVEA VPLTPSSWKG
201: VWDLGAGDGI FSVPPLTPTS PSSAT
001: MATKQEALAI DFISQHLLTD FVSMETDHPS LFTNQLHNFH SETGPRTITN QSPKPNSTLN QRKPPLPNLS VSRTVSTKTE KEEEERHYRG VRRRPWGKYA
101: AEIRDPNKKG CRIWLGTYDT AVEAGRAYDQ AAFQLRGRKA ILNFPLDVRV TSETCSGEGV IGLGKRKRDK GSPPEEEKAA RVKVEEEESN TSETTEAEVE
201: PVVPLTPSSW MGFWDVGAGD GIFSIPPLSP TSPNFSVISV T
101: AEIRDPNKKG CRIWLGTYDT AVEAGRAYDQ AAFQLRGRKA ILNFPLDVRV TSETCSGEGV IGLGKRKRDK GSPPEEEKAA RVKVEEEESN TSETTEAEVE
201: PVVPLTPSSW MGFWDVGAGD GIFSIPPLSP TSPNFSVISV T
Arabidopsis Description
ERF104Ethylene-responsive transcription factor ERF104 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKG1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.