Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr2P19320_001 | |
| GSMUA_Achr5P06640_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61600.1 | GSMUA_Achr10P... | AT2G43790.1 | 19416906 |
| AT5G61600.1 | GSMUA_Achr2P19320_001 | AT2G43790.1 | 19416906 |
| AT5G61600.1 | GSMUA_Achr5P06640_001 | AT2G43790.1 | 19416906 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P00480_001 | Banana | nucleus | 58.72 | 70.41 |
| GSMUA_Achr4P05510_001 | Banana | nucleus | 20.85 | 53.26 |
| GSMUA_Achr7P06910_001 | Banana | nucleus | 52.34 | 52.12 |
| GSMUA_Achr11P... | Banana | nucleus | 39.57 | 48.95 |
| GSMUA_Achr5P24680_001 | Banana | nucleus | 22.98 | 45.38 |
| GSMUA_Achr1P15350_001 | Banana | nucleus | 22.13 | 43.7 |
| GSMUA_Achr4P12070_001 | Banana | nucleus | 22.55 | 41.73 |
| Bra035732.1-P | Field mustard | nucleus | 34.89 | 37.79 |
| CDX71695 | Canola | nucleus | 35.32 | 37.73 |
| CDY05842 | Canola | nucleus | 34.89 | 37.27 |
| VIT_16s0013g01120.t01 | Wine grape | nucleus, plastid | 37.02 | 35.95 |
| AT5G51190.1 | Thale cress | nucleus | 33.62 | 35.75 |
| VIT_16s0013g01110.t01 | Wine grape | nucleus | 35.74 | 34.85 |
| VIT_16s0013g00900.t01 | Wine grape | nucleus | 32.77 | 33.62 |
| GSMUA_Achr5P12530_001 | Banana | nucleus | 28.51 | 33.5 |
| Solyc03g093540.1.1 | Tomato | nucleus | 31.49 | 32.46 |
| CDY40779 | Canola | nucleus | 25.11 | 32.42 |
| Bra028690.1-P | Field mustard | nucleus | 25.11 | 32.42 |
| KRH28164 | Soybean | nucleus | 37.87 | 32.25 |
| PGSC0003DMT400086995 | Potato | nucleus | 33.62 | 32.24 |
| PGSC0003DMT400090475 | Potato | nucleus | 33.62 | 32.24 |
| PGSC0003DMT400027937 | Potato | nucleus | 34.47 | 32.02 |
| Solyc03g093550.1.1 | Tomato | nucleus | 32.77 | 31.95 |
| KRH77324 | Soybean | nucleus | 37.02 | 31.64 |
| Solyc03g093560.1.1 | Tomato | nucleus | 32.77 | 31.56 |
| VIT_16s0013g01000.t01 | Wine grape | nucleus | 35.74 | 31.34 |
| GSMUA_Achr2P17810_001 | Banana | nucleus | 25.53 | 31.25 |
| CDY38399 | Canola | nucleus | 34.04 | 31.01 |
| AT5G07580.1 | Thale cress | golgi, nucleus, plastid | 27.23 | 30.92 |
| CDY14036 | Canola | nucleus | 24.68 | 30.69 |
| GSMUA_Achr6P04440_001 | Banana | nucleus | 22.55 | 30.46 |
| VIT_16s0013g00990.t01 | Wine grape | nucleus | 35.74 | 30.22 |
| GSMUA_Achr6P27040_001 | Banana | nucleus | 21.7 | 30.0 |
| Bra009250.1-P | Field mustard | nucleus | 26.81 | 29.86 |
| CDY64666 | Canola | nucleus | 26.81 | 29.86 |
| CDY42869 | Canola | nucleus | 27.66 | 29.68 |
| CDY60497 | Canola | nucleus | 25.96 | 29.61 |
| KRH04191 | Soybean | nucleus | 34.47 | 29.45 |
| VIT_16s0013g01070.t01 | Wine grape | nucleus | 34.47 | 29.45 |
| AT5G61590.1 | Thale cress | nucleus | 25.11 | 29.35 |
| Solyc05g052030.1.1 | Tomato | nucleus | 25.11 | 29.35 |
| Bra040158.1-P | Field mustard | nucleus | 33.19 | 29.32 |
| CDY64966 | Canola | nucleus | 33.19 | 29.32 |
| GSMUA_Achr1P00490_001 | Banana | nucleus | 25.53 | 29.27 |
| VIT_16s0013g01050.t01 | Wine grape | nucleus | 34.47 | 29.24 |
| Bra029319.1-P | Field mustard | nucleus | 27.66 | 29.15 |
| VIT_16s0013g00980.t01 | Wine grape | nucleus | 34.04 | 29.09 |
| PGSC0003DMT400041327 | Potato | nucleus | 36.6 | 29.05 |
| CDY67760 | Canola | nucleus | 27.66 | 28.89 |
| VIT_16s0013g00950.t01 | Wine grape | nucleus | 34.04 | 28.88 |
| VIT_16s0013g01060.t01 | Wine grape | nucleus | 34.04 | 28.88 |
| KRH57483 | Soybean | nucleus | 34.04 | 28.78 |
| PGSC0003DMT400041328 | Potato | nucleus | 25.11 | 28.64 |
| CDX76570 | Canola | nucleus | 34.04 | 28.57 |
| CDY64687 | Canola | nucleus | 34.89 | 28.57 |
| GSMUA_Achr3P15550_001 | Banana | nucleus | 22.13 | 28.42 |
| KRH34607 | Soybean | nucleus | 24.26 | 28.36 |
| KRG92180 | Soybean | nucleus | 23.83 | 28.14 |
| VIT_16s0013g01090.t01 | Wine grape | nucleus | 31.49 | 28.03 |
| CDY27922 | Canola | nucleus | 22.55 | 27.89 |
| CDY16811 | Canola | nucleus | 23.83 | 27.86 |
| KRG90129 | Soybean | nucleus | 31.49 | 27.82 |
| Bra024953.1-P | Field mustard | nucleus | 34.89 | 27.8 |
| CDY41042 | Canola | nucleus | 34.47 | 27.65 |
| Bra035919.1-P | Field mustard | nucleus | 23.83 | 27.59 |
| Bra021049.1-P | Field mustard | nucleus | 32.77 | 27.4 |
| Bra012939.1-P | Field mustard | nucleus | 22.98 | 27.27 |
| CDY23053 | Canola | nucleus | 22.98 | 27.27 |
| CDY02130 | Canola | nucleus | 22.98 | 27.27 |
| Bra017493.1-P | Field mustard | nucleus | 34.04 | 27.21 |
| CDY25977 | Canola | nucleus | 34.04 | 27.03 |
| AT5G47230.1 | Thale cress | nucleus | 34.47 | 27.0 |
| PGSC0003DMT400067472 | Potato | nucleus | 31.91 | 26.98 |
| AT5G61600.1 | Thale cress | nucleus | 27.66 | 26.97 |
| AT4G17490.1 | Thale cress | nucleus | 32.34 | 26.95 |
| CDX87222 | Canola | nucleus | 22.98 | 26.87 |
| KRG90130 | Soybean | nucleus | 23.83 | 26.79 |
| KRH33374 | Soybean | nucleus | 31.49 | 26.33 |
| CDX77755 | Canola | nucleus | 34.47 | 26.13 |
| Solyc08g078190.1.1 | Tomato | nucleus | 35.32 | 25.78 |
| GSMUA_Achr11P... | Banana | nucleus | 28.94 | 25.37 |
| VIT_16s0013g01030.t01 | Wine grape | cytosol | 11.91 | 25.23 |
| CDY23052 | Canola | nucleus | 27.23 | 25.0 |
| CDY02129 | Canola | nucleus | 26.38 | 24.7 |
| KRH33376 | Soybean | nucleus | 22.98 | 24.55 |
| Bra012938.1-P | Field mustard | nucleus | 26.81 | 24.42 |
| Solyc05g052040.1.1 | Tomato | nucleus | 36.17 | 23.29 |
| VIT_16s0013g00970.t01 | Wine grape | nucleus | 29.36 | 21.84 |
| GSMUA_Achr5P21050_001 | Banana | nucleus | 29.36 | 20.85 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr2G10490_001 | EnsemblPlants:GSMUA_Achr2P10490_001 | EnsemblPlants:GSMUA_Achr2T10490_001 |
| InterPro:IPR001471 | InterPro:IPR036955 | UniProt:M0S6U0 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31677 | PANTHER:PTHR31677:SF43 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI000295580A | SEG:seg |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G10490_001]
Coordinates
chr2:+:13584576..13585358
Molecular Weight (calculated)
25552.3 Da
IEP (calculated)
7.378
GRAVY (calculated)
-0.283
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLIGRGNG NLTLDFIRHH LLADLPPTPP SAVLPPPLPI GSHHHHHDGY RFPEPAAPMI SFGPAGPDRL SSLTVALSSQ LGFDRVEEER PLVARDDARR
101: YRGVRQRPWG KFAAEIRDPN RRGSRIWLGT FDTAVEAARA YDRAAFQMRG RKAILNFPNE VGSSRHLAPP PPAPQSPEAE VVEAESVPSA FTLTPSSWSS
201: MWDFVEADAA GLFDVSALTP LSPHPSLGIA ALLVK
101: YRGVRQRPWG KFAAEIRDPN RRGSRIWLGT FDTAVEAARA YDRAAFQMRG RKAILNFPNE VGSSRHLAPP PPAPQSPEAE VVEAESVPSA FTLTPSSWSS
201: MWDFVEADAA GLFDVSALTP LSPHPSLGIA ALLVK
001: MASSHQQQQE QDQSALDLIT QHLLTDFPSL DTFASTIHHC TTSTLSQRKP PLATIAVPTT APVVQENDQR HYRGVRRRPW GKYAAEIRDP NKKGVRVWLG
101: TFDTAMEAAR GYDKAAFKLR GSKAILNFPL EAGKHEDLGD NKKTISLKAK RKRQVTEDES QLISRKAVKR EEAQVQADAC PLTPSSWKGF WDGADSKDMG
201: IFSVPLLSPC PSLGHSQLVV T
101: TFDTAMEAAR GYDKAAFKLR GSKAILNFPL EAGKHEDLGD NKKTISLKAK RKRQVTEDES QLISRKAVKR EEAQVQADAC PLTPSSWKGF WDGADSKDMG
201: IFSVPLLSPC PSLGHSQLVV T
Arabidopsis Description
ERF105Ethylene-responsive transcription factor ERF105 [Source:UniProtKB/Swiss-Prot;Acc:Q8VY90]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.