Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61600.1 | CDX79801 | AT2G43790.1 | 19416906 |
| AT5G61600.1 | CDX83459 | AT2G43790.1 | 19416906 |
| AT5G61600.1 | CDY17911 | AT2G43790.1 | 19416906 |
| AT5G61600.1 | CDY44256 | AT2G43790.1 | 19416906 |
| AT5G61600.1 | CDY13551 | AT5G44420.1 | 19416906 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012938.1-P | Field mustard | nucleus | 98.41 | 95.74 |
| CDY23052 | Canola | nucleus | 94.82 | 92.97 |
| CDY42869 | Canola | nucleus | 69.72 | 79.91 |
| AT5G61600.1 | Thale cress | nucleus | 76.49 | 79.67 |
| CDY67760 | Canola | nucleus | 70.12 | 78.22 |
| CDY40779 | Canola | nucleus | 28.69 | 39.56 |
| CDX77538 | Canola | nucleus | 19.12 | 38.4 |
| CDY14036 | Canola | nucleus | 28.69 | 38.1 |
| CDY50478 | Canola | nucleus | 19.92 | 37.88 |
| CDY32941 | Canola | nucleus | 19.92 | 37.88 |
| CDY60497 | Canola | nucleus | 29.48 | 35.92 |
| CDY64666 | Canola | nucleus | 29.88 | 35.55 |
| CDX85071 | Canola | nucleus | 19.52 | 35.51 |
| CDY18225 | Canola | nucleus | 18.73 | 35.34 |
| CDX77537 | Canola | nucleus | 19.52 | 35.25 |
| CDY60663 | Canola | nucleus | 18.73 | 35.07 |
| CDY38052 | Canola | nucleus | 23.11 | 34.94 |
| CDY53187 | Canola | nucleus | 18.73 | 34.81 |
| CDY10057 | Canola | nucleus | 18.73 | 34.81 |
| CDY35516 | Canola | nucleus | 18.73 | 34.06 |
| CDX85070 | Canola | nucleus | 18.73 | 34.06 |
| CDY02130 | Canola | nucleus | 26.69 | 33.84 |
| CDY23053 | Canola | nucleus | 26.69 | 33.84 |
| CDY16811 | Canola | nucleus | 26.69 | 33.33 |
| CDX87222 | Canola | nucleus | 25.9 | 32.34 |
| GSMUA_Achr1P00480_001 | Banana | nucleus | 25.1 | 32.14 |
| CDX71695 | Canola | nucleus | 26.29 | 30.0 |
| CDY05842 | Canola | nucleus | 25.9 | 29.55 |
| GSMUA_Achr11P... | Banana | nucleus | 21.91 | 28.95 |
| Zm00001d029940_P001 | Maize | nucleus | 26.29 | 27.39 |
| HORVU1Hr1G055710.1 | Barley | nucleus | 26.29 | 27.27 |
| GSMUA_Achr7P06910_001 | Banana | nucleus | 25.5 | 27.12 |
| TraesCS1A01G218100.1 | Wheat | nucleus | 25.5 | 27.12 |
| GSMUA_Achr2P10490_001 | Banana | nucleus | 24.7 | 26.38 |
| CDX76569 | Canola | nucleus | 18.73 | 26.11 |
| TraesCS1B01G231500.1 | Wheat | nucleus | 26.29 | 25.78 |
| CDY35515 | Canola | nucleus | 16.33 | 25.62 |
| CDY33523 | Canola | nucleus | 21.91 | 25.46 |
| CDX77750 | Canola | nucleus | 21.91 | 24.77 |
| CDY38401 | Canola | nucleus | 22.31 | 24.67 |
| CDY65883 | Canola | nucleus | 21.91 | 24.44 |
| OQU92128 | Sorghum | nucleus | 26.69 | 24.19 |
| CDY38399 | Canola | nucleus | 24.3 | 23.64 |
| CDY68787 | Canola | nucleus | 21.12 | 23.56 |
| CDY56473 | Canola | nucleus | 21.51 | 23.38 |
| CDY08986 | Canola | nucleus | 19.52 | 23.11 |
| CDY28965 | Canola | nucleus | 21.12 | 23.04 |
| CDY64687 | Canola | nucleus | 26.29 | 23.0 |
| CDX76570 | Canola | nucleus | 25.5 | 22.86 |
| CDX74692 | Canola | nucleus | 21.12 | 22.84 |
| CDY30489 | Canola | nucleus | 21.12 | 22.84 |
| CDY43434 | Canola | nucleus | 20.32 | 22.37 |
| CDY23459 | Canola | nucleus | 21.12 | 22.36 |
| CDY25977 | Canola | nucleus | 26.29 | 22.3 |
| CDY41042 | Canola | nucleus | 25.9 | 22.18 |
| CDY64966 | Canola | nucleus | 23.51 | 22.18 |
| CDY27923 | Canola | nucleus | 22.31 | 21.96 |
| CDY25978 | Canola | nucleus | 20.72 | 21.67 |
| CDY27922 | Canola | nucleus | 16.33 | 21.58 |
| CDX77755 | Canola | nucleus | 26.29 | 21.29 |
| Zm00001d002761_P001 | Maize | nucleus | 26.69 | 21.27 |
| EES11214 | Sorghum | nucleus | 23.11 | 20.35 |
| Os04t0547600-01 | Rice | nucleus | 26.29 | 20.12 |
| TraesCS2A01G417200.1 | Wheat | nucleus | 26.69 | 19.94 |
| EES11211 | Sorghum | nucleus | 25.5 | 19.81 |
| TraesCS2B01G436100.1 | Wheat | nucleus | 26.69 | 19.65 |
| TraesCS2B01G436200.1 | Wheat | nucleus | 25.9 | 19.4 |
| TraesCS2D01G414300.1 | Wheat | nucleus | 26.29 | 19.24 |
| Zm00001d017466_P001 | Maize | nucleus | 25.1 | 19.15 |
| TraesCS2A01G417100.1 | Wheat | nucleus | 26.29 | 19.13 |
| Zm00001d002760_P001 | Maize | nucleus | 27.09 | 19.1 |
| TraesCS2D01G414500.1 | Wheat | nucleus | 25.5 | 19.05 |
| KXG26836 | Sorghum | nucleus | 26.69 | 18.98 |
| KXG26835 | Sorghum | nucleus | 25.1 | 18.86 |
| HORVU6Hr1G062430.1 | Barley | nucleus | 22.71 | 18.81 |
| TraesCS6D01G225700.1 | Wheat | nucleus | 23.11 | 18.3 |
| TraesCS6B01G280800.1 | Wheat | nucleus | 23.11 | 18.24 |
| TraesCS6A01G243500.1 | Wheat | nucleus | 23.11 | 18.12 |
| Zm00001d051340_P001 | Maize | nucleus | 24.3 | 17.84 |
| OQU76347 | Sorghum | nucleus | 20.72 | 17.57 |
| KXG31094 | Sorghum | nucleus | 23.9 | 17.54 |
| Os02t0655200-02 | Rice | nucleus | 23.9 | 17.44 |
| HORVU2Hr1G098140.2 | Barley | mitochondrion, nucleus | 16.73 | 11.73 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078EN54 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDY02129 |
| ProteinID:CDY02129 | ProteinID:CDY02129.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00113524001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31677 | PANTHER:PTHR31677:SF43 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EDF07B | SEG:seg | : | : | : | : |
Description
BnaA03g40380D
Coordinates
chrLK031932:+:281046..281921
Molecular Weight (calculated)
28035.6 Da
IEP (calculated)
6.815
GRAVY (calculated)
-0.692
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTKQESLAI EFISQHLLTD FASTETKPSS FTLHETGPSL FTSQVHDYHL ETSPRTINNQ THKPNSTLNR RKPPLPNLSV SRTVSSTVKK TEEEEEERHY
101: RGVRRRPWGK YAAEIRDPNK KGSRIWLGTY DRAVEAARAY DQAAFQLRGR KAILNFPLDV RATSESFLEE GVNGKRKRVK SSPAVEEEEK AVAVRSDTTE
201: TTEAEAEAEV EAVPLTPSSW MGFWDVGAGD GIFSVPPLSP TSPNFSVISV T
101: RGVRRRPWGK YAAEIRDPNK KGSRIWLGTY DRAVEAARAY DQAAFQLRGR KAILNFPLDV RATSESFLEE GVNGKRKRVK SSPAVEEEEK AVAVRSDTTE
201: TTEAEAEAEV EAVPLTPSSW MGFWDVGAGD GIFSVPPLSP TSPNFSVISV T
001: MATKQEALAI DFISQHLLTD FVSMETDHPS LFTNQLHNFH SETGPRTITN QSPKPNSTLN QRKPPLPNLS VSRTVSTKTE KEEEERHYRG VRRRPWGKYA
101: AEIRDPNKKG CRIWLGTYDT AVEAGRAYDQ AAFQLRGRKA ILNFPLDVRV TSETCSGEGV IGLGKRKRDK GSPPEEEKAA RVKVEEEESN TSETTEAEVE
201: PVVPLTPSSW MGFWDVGAGD GIFSIPPLSP TSPNFSVISV T
101: AEIRDPNKKG CRIWLGTYDT AVEAGRAYDQ AAFQLRGRKA ILNFPLDVRV TSETCSGEGV IGLGKRKRDK GSPPEEEKAA RVKVEEEESN TSETTEAEVE
201: PVVPLTPSSW MGFWDVGAGD GIFSIPPLSP TSPNFSVISV T
Arabidopsis Description
ERF104Ethylene-responsive transcription factor ERF104 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKG1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.