Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
TraesCS7A01G111300.1 | |
TraesCS7B01G009200.1 | |
TraesCS7D01G106400.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G61600.1 | TraesCS7A01G111300.1 | AT2G43790.1 | 19416906 |
AT5G61600.1 | TraesCS7B01G009200.1 | AT2G43790.1 | 19416906 |
AT5G61600.1 | TraesCS7D01G106400.1 | AT2G43790.1 | 19416906 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
HORVU1Hr1G055710.1 | Barley | nucleus | 86.86 | 84.71 |
TraesCS1B01G231500.1 | Wheat | nucleus | 90.25 | 83.2 |
Zm00001d029940_P001 | Maize | nucleus | 58.47 | 57.26 |
OQU92128 | Sorghum | nucleus | 59.32 | 50.54 |
TraesCS4A01G416000.1 | Wheat | nucleus | 22.03 | 42.28 |
TraesCS1A01G141800.1 | Wheat | nucleus | 21.19 | 42.02 |
Bra035732.1-P | Field mustard | nucleus | 34.32 | 37.33 |
GSMUA_Achr11P... | Banana | nucleus | 29.66 | 36.84 |
CDY05842 | Canola | nucleus | 34.32 | 36.82 |
CDX71695 | Canola | nucleus | 34.32 | 36.82 |
TraesCS5A01G065400.1 | Wheat | nucleus | 18.22 | 35.54 |
AT5G51190.1 | Thale cress | nucleus | 32.2 | 34.39 |
VIT_16s0013g01120.t01 | Wine grape | nucleus, plastid | 35.17 | 34.3 |
VIT_16s0013g00900.t01 | Wine grape | nucleus | 33.05 | 34.06 |
VIT_16s0013g01110.t01 | Wine grape | nucleus | 34.32 | 33.61 |
TraesCS4A01G001400.1 | Wheat | nucleus | 18.22 | 32.82 |
Solyc03g093560.1.1 | Tomato | nucleus | 33.05 | 31.97 |
PGSC0003DMT400090475 | Potato | nucleus | 33.05 | 31.84 |
PGSC0003DMT400086995 | Potato | nucleus | 33.05 | 31.84 |
PGSC0003DMT400027937 | Potato | nucleus | 33.9 | 31.62 |
Solyc03g093550.1.1 | Tomato | nucleus | 32.2 | 31.54 |
KRH28164 | Soybean | nucleus | 36.86 | 31.52 |
CDY38399 | Canola | nucleus | 34.32 | 31.4 |
Bra028690.1-P | Field mustard | nucleus | 24.15 | 31.32 |
CDY40779 | Canola | nucleus | 24.15 | 31.32 |
KRH77324 | Soybean | nucleus | 36.44 | 31.27 |
Solyc03g093540.1.1 | Tomato | nucleus | 29.66 | 30.7 |
VIT_16s0013g01000.t01 | Wine grape | nucleus | 34.75 | 30.6 |
KRH57483 | Soybean | nucleus | 36.02 | 30.58 |
TraesCS2A01G417200.1 | Wheat | nucleus | 42.8 | 30.06 |
CDY27922 | Canola | nucleus | 24.15 | 30.0 |
VIT_16s0013g01070.t01 | Wine grape | nucleus | 34.75 | 29.82 |
KRH04191 | Soybean | nucleus | 34.75 | 29.82 |
Bra040158.1-P | Field mustard | nucleus | 33.47 | 29.7 |
CDY64966 | Canola | nucleus | 33.47 | 29.7 |
CDY42869 | Canola | nucleus | 27.54 | 29.68 |
Bra029319.1-P | Field mustard | nucleus | 27.97 | 29.6 |
TraesCS2A01G417100.1 | Wheat | nucleus | 43.22 | 29.57 |
CDX76570 | Canola | nucleus | 34.75 | 29.29 |
VIT_16s0013g01060.t01 | Wine grape | nucleus | 34.32 | 29.24 |
VIT_16s0013g00990.t01 | Wine grape | nucleus | 34.32 | 29.14 |
CDY14036 | Canola | nucleus | 23.31 | 29.1 |
VIT_16s0013g00980.t01 | Wine grape | nucleus | 33.9 | 29.09 |
PGSC0003DMT400041327 | Potato | nucleus | 36.44 | 29.05 |
CDY67760 | Canola | nucleus | 27.54 | 28.89 |
VIT_16s0013g01050.t01 | Wine grape | nucleus | 33.9 | 28.88 |
VIT_16s0013g00950.t01 | Wine grape | nucleus | 33.9 | 28.88 |
VIT_16s0013g01090.t01 | Wine grape | nucleus | 32.2 | 28.79 |
CDY64687 | Canola | nucleus | 34.75 | 28.57 |
Bra021049.1-P | Field mustard | nucleus | 33.47 | 28.11 |
AT4G17490.1 | Thale cress | nucleus | 33.47 | 28.01 |
VIT_16s0013g01030.t01 | Wine grape | cytosol | 13.14 | 27.93 |
Solyc05g052030.1.1 | Tomato | nucleus | 23.73 | 27.86 |
AT5G61600.1 | Thale cress | nucleus | 28.39 | 27.8 |
Bra024953.1-P | Field mustard | nucleus | 34.75 | 27.8 |
AT5G47230.1 | Thale cress | nucleus | 35.17 | 27.67 |
KRG92180 | Soybean | nucleus | 23.31 | 27.64 |
KRG90129 | Soybean | nucleus | 30.93 | 27.44 |
KRH34607 | Soybean | nucleus | 23.31 | 27.36 |
KRG90130 | Soybean | nucleus | 24.15 | 27.27 |
TraesCS6A01G243500.1 | Wheat | nucleus | 36.86 | 27.19 |
CDY60497 | Canola | nucleus | 23.73 | 27.18 |
PGSC0003DMT400041328 | Potato | nucleus | 23.73 | 27.18 |
Bra017493.1-P | Field mustard | nucleus | 33.47 | 26.87 |
CDY41042 | Canola | nucleus | 33.05 | 26.62 |
AT5G07580.1 | Thale cress | golgi, nucleus, plastid | 23.31 | 26.57 |
CDY64666 | Canola | nucleus | 23.73 | 26.54 |
Bra009250.1-P | Field mustard | nucleus | 23.73 | 26.54 |
CDY25977 | Canola | nucleus | 33.05 | 26.35 |
CDY23052 | Canola | nucleus | 28.39 | 26.17 |
KRH33376 | Soybean | nucleus | 24.15 | 25.91 |
AT5G61590.1 | Thale cress | nucleus | 22.03 | 25.87 |
CDX77755 | Canola | nucleus | 33.9 | 25.81 |
CDY02130 | Canola | nucleus | 21.61 | 25.76 |
CDY23053 | Canola | nucleus | 21.61 | 25.76 |
Bra012939.1-P | Field mustard | nucleus | 21.61 | 25.76 |
Bra012938.1-P | Field mustard | nucleus | 27.97 | 25.58 |
CDY02129 | Canola | nucleus | 27.12 | 25.5 |
CDY16811 | Canola | nucleus | 21.61 | 25.37 |
KRH33374 | Soybean | nucleus | 30.08 | 25.27 |
Bra035919.1-P | Field mustard | nucleus | 21.61 | 25.12 |
PGSC0003DMT400067472 | Potato | nucleus | 28.81 | 24.46 |
CDX87222 | Canola | nucleus | 20.76 | 24.38 |
Solyc08g078190.1.1 | Tomato | nucleus | 32.63 | 23.91 |
Solyc05g052040.1.1 | Tomato | nucleus | 36.86 | 23.84 |
TraesCS6A01G243300.1 | Wheat | nucleus | 27.12 | 23.53 |
TraesCS2A01G417300.1 | Wheat | nucleus | 29.24 | 23.15 |
VIT_16s0013g00970.t01 | Wine grape | nucleus | 28.39 | 21.2 |
Protein Annotations
MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | ncoils:Coil | InterPro:DNA-bd_dom_sf |
GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 |
GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 |
InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31677 | PANTHER:PTHR31677:SF43 |
SMART:SM00380 | SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS1A01G218100 | EnsemblPlants:TraesCS1A01G218100.1 | TIGR:cd00018 | SEG:seg |
Description
No Description!
Coordinates
chr1A:-:386479602..386480312
Molecular Weight (calculated)
26383.0 Da
IEP (calculated)
5.434
GRAVY (calculated)
-0.580
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFTHRHDLD LIRAHLLDDL HADAVALASS GGDSDSSASS PPGWRRPALS LSLPPKLAMT VMEQQPQQES CGYVEGQDEE EDFRRYRGVR LRSWGKFAAE
101: IRDPARKGAR VWLGTYDDAV EAARAYDRAA FRLRGSKAIL NFPNEVGTQS IQWTSPAPLA DTIAAVPTGG KRMRPAQEEE RLREVKKERL QLKEEEEEGA
201: RDADFWEELK VICSLPPLSP LSPYPHFAFP QLSVVS
101: IRDPARKGAR VWLGTYDDAV EAARAYDRAA FRLRGSKAIL NFPNEVGTQS IQWTSPAPLA DTIAAVPTGG KRMRPAQEEE RLREVKKERL QLKEEEEEGA
201: RDADFWEELK VICSLPPLSP LSPYPHFAFP QLSVVS
001: MASFEESSDL EAIQSHLLED LLVCDGFMGD FDFDASFVSG LWCIEPHVPK QEPDSPVLDP DSFVNEFLQV EGESSSSSSP ELNSSSSTYE TDQSVKKAER
101: FEEEVDARHY RGVRRRPWGK FAAEIRDPAK KGSRIWLGTF ESDVDAARAY DCAAFKLRGR KAVLNFPLDA GKYEAPANSG RKRKRSDVHE ELQRTQSNSS
201: SSSCDAF
101: FEEEVDARHY RGVRRRPWGK FAAEIRDPAK KGSRIWLGTF ESDVDAARAY DCAAFKLRGR KAVLNFPLDA GKYEAPANSG RKRKRSDVHE ELQRTQSNSS
201: SSSCDAF
Arabidopsis Description
ERF106Ethylene-responsive transcription factor ERF106 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY05]
SUBAcon: [golgi,plastid,nucleus]
SUBAcon: [golgi,plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.