Factsheet for TraesCS4A01G001400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G001200.1	Wheat	nucleus	97.71	100.0
TraesCS4B01G001900.1	Wheat	nucleus	96.18	96.92
HORVU4Hr1G000960.1	Barley	nucleus	95.42	93.28
KXG35151	Sorghum	nucleus	70.23	71.32
Zm00001d019744_P001	Maize	nucleus	70.99	68.38
TraesCS5A01G065400.1	Wheat	nucleus	61.07	66.12
Zm00001d005309_P001	Maize	nucleus	66.41	65.91
Os09t0571700-00	Rice	nucleus	63.36	63.36
GSMUA_Achr4P05510_001	Banana	nucleus	38.93	55.43
GSMUA_Achr4P12070_001	Banana	nucleus	51.15	52.76
TraesCS1A01G141800.1	Wheat	nucleus	47.33	52.1
VIT_05s0049g00490.t01	Wine grape	nucleus	48.85	49.23
PGSC0003DMT400044383	Potato	nucleus	51.91	48.92
TraesCS4A01G416000.1	Wheat	nucleus	45.04	47.97
Solyc09g089910.1.1	Tomato	nucleus	51.15	46.85
PGSC0003DMT400034871	Potato	nucleus	44.27	46.4
VIT_07s0005g03210.t01	Wine grape	nucleus	51.15	46.21
Solyc03g005500.1.1	Tomato	nucleus	45.04	45.74
KRH34485	Soybean	nucleus	51.15	45.58
KRG92309	Soybean	nucleus	50.38	44.9
VIT_07s0005g03200.t01	Wine grape	nucleus	50.38	43.14
VIT_07s0005g03190.t01	Wine grape	nucleus	48.85	41.03
KRH69131	Soybean	nucleus	51.15	39.88
TraesCS1A01G218100.1	Wheat	nucleus	32.82	18.22
TraesCS6A01G243300.1	Wheat	nucleus	35.88	17.28
TraesCS2A01G417300.1	Wheat	nucleus	38.93	17.11
TraesCS2A01G417200.1	Wheat	nucleus	38.17	14.88
TraesCS6A01G243500.1	Wheat	nucleus	35.88	14.69
TraesCS2A01G417100.1	Wheat	nucleus	36.64	13.91

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190
PANTHER:PTHR31190:SF71	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS4A01G001400	EnsemblPlants:TraesCS4A01G001400.1	TIGR:cd00018
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:1076557..1076952

Molecular Weight (calculated)

14624.7 Da

IEP (calculated)

6.974

GRAVY (calculated)

-1.116

Length

131 amino acids

Sequence
(BLAST)

001: MEGGEGSGGG GEPTKYRGVR RRPWGKFAAE IRDSSRHGVR MWLGTFDTAE EAAAAYDRSA YSMRGRNAVL NFPDRAHVYE AEARRQGQGS SSSARQQNQQ
101: QQQGQSGVIE FEYLDDDVLQ SMLHDHDKSN K

Best Arabidopsis Sequence Match ( AT5G43410.1 )
(BLAST)

001: MDQGGRGVGA EHGKYRGVRR RPWGKYAAEI RDSRKHGERV WLGTFDTAEE AARAYDQAAY SMRGQAAILN FPHEYNMGSG VSSSTAMAGS SSASASASSS
101: SRQVFEFEYL DDSVLEELLE EGEKPNKGKK K

Arabidopsis Description

ERF096Ethylene-responsive transcription factor ERF096 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSX0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.