CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005309_P001	Maize	nucleus	81.4	79.55
Zm00001d019744_P001	Maize	nucleus	83.72	79.41
TraesCS4D01G001200.1	Wheat	nucleus	70.54	71.09
TraesCS4B01G001900.1	Wheat	nucleus	71.32	70.77
TraesCS4A01G001400.1	Wheat	nucleus	71.32	70.23
KXG25362	Sorghum	nucleus	69.77	68.7
HORVU4Hr1G000960.1	Barley	nucleus	70.54	67.91
Os09t0571700-00	Rice	nucleus	65.12	64.12
TraesCS6B01G069200.1	Wheat	nucleus	60.47	61.42
GSMUA_Achr4P05510_001	Banana	nucleus	41.86	58.7
GSMUA_Achr4P12070_001	Banana	nucleus	52.71	53.54
VIT_05s0049g00490.t01	Wine grape	nucleus	52.71	52.31
PGSC0003DMT400034871	Potato	nucleus	49.61	51.2
PGSC0003DMT400044383	Potato	nucleus	54.26	50.36
VIT_07s0005g03210.t01	Wine grape	nucleus	55.81	49.66
KXG40163	Sorghum	nucleus	51.16	49.62
Solyc03g005500.1.1	Tomato	nucleus	49.61	49.61
Solyc09g089910.1.1	Tomato	nucleus	54.26	48.95
KRH34485	Soybean	nucleus	55.04	48.3
KRG92309	Soybean	nucleus	53.49	46.94
KXG38440	Sorghum	nucleus	47.29	44.2
VIT_07s0005g03200.t01	Wine grape	nucleus	49.61	41.83
KRH69131	Soybean	nucleus	54.26	41.67
VIT_07s0005g03190.t01	Wine grape	nucleus	49.61	41.03
OQU82076	Sorghum	nucleus	40.31	17.75
OQU92128	Sorghum	nucleus	37.21	17.33
EES11214	Sorghum	nucleus	36.43	16.49
OQU76347	Sorghum	nucleus	36.43	15.88
KXG26835	Sorghum	nucleus	41.09	15.87
EES11211	Sorghum	nucleus	39.53	15.79
EES05793	Sorghum	nucleus	37.98	15.76
KXG31094	Sorghum	nucleus	40.31	15.2
KXG26836	Sorghum	nucleus	40.31	14.73

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	UniProt:A0A1B6QB79	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	EnsemblPlants:KXG35151	ProteinID:KXG35151	ProteinID:KXG35151.1	PFAM:PF00847	PIRSF:PIRSF038123
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF71	SMART:SM00380	EnsemblPlantsGene:SORBI_3002G139300
SUPFAM:SSF54171	UniParc:UPI0003C6B16A	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:21877278..21878209

Molecular Weight (calculated)

14264.3 Da

IEP (calculated)

8.839

GRAVY (calculated)

-0.939

Length

129 amino acids

Sequence
(BLAST)

001: MDDGGGEPTK YRGVRRRPWG KYAAEIRDSS RHGVRIWLGT FDTAEEAARA YDRSAYSMRG ANAVLNFPED AAVYAAAFRG GSGGSSSSSR QQQHGGRDVI
101: EFEYLDDEVL QEMLKSHEPS SSSARNKKK

Best Arabidopsis Sequence Match ( AT5G43410.1 )
(BLAST)

001: MDQGGRGVGA EHGKYRGVRR RPWGKYAAEI RDSRKHGERV WLGTFDTAEE AARAYDQAAY SMRGQAAILN FPHEYNMGSG VSSSTAMAGS SSASASASSS
101: SRQVFEFEYL DDSVLEELLE EGEKPNKGKK K

Arabidopsis Description

ERF096Ethylene-responsive transcription factor ERF096 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSX0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.