Factsheet for TraesCS1A01G141800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G158400.1	Wheat	nucleus	98.32	98.32
TraesCS1D01G140900.1	Wheat	nucleus	94.96	94.96
HORVU1Hr1G037530.1	Barley	nucleus	88.24	85.37
KXG38440	Sorghum	nucleus	80.67	69.57
TraesCS4A01G416000.1	Wheat	nucleus	70.59	68.29
Zm00001d014113_P001	Maize	nucleus	77.31	67.15
KRG95653	Soybean	nucleus	59.66	57.26
GSMUA_Achr1P15350_001	Banana	nucleus	57.14	57.14
KRH19547	Soybean	nucleus	57.98	50.0
KRH32175	Soybean	nucleus	57.14	49.63
CDX77538	Canola	nucleus	52.1	49.6
TraesCS5A01G065400.1	Wheat	nucleus	50.42	49.59
AT3G23220.1	Thale cress	nucleus	56.3	48.2
TraesCS4A01G001400.1	Wheat	nucleus	52.1	47.33
AT5G43410.1	Thale cress	nucleus	51.26	46.56
CDX85070	Canola	nucleus	53.78	46.38
Bra014924.1-P	Field mustard	nucleus	52.94	45.65
CDY50478	Canola	nucleus	50.42	45.45
CDY32941	Canola	nucleus	50.42	45.45
Bra027493.1-P	Field mustard	nucleus	50.42	45.45
AT1G04370.1	Thale cress	nucleus	49.58	44.36
CDY18225	Canola	nucleus	48.74	43.61
Bra015310.1-P	Field mustard	nucleus	48.74	43.28
CDY60663	Canola	nucleus	48.74	43.28
CDY53187	Canola	nucleus	48.74	42.96
CDY10057	Canola	nucleus	48.74	42.96
Bra032512.1-P	Field mustard	nucleus	48.74	42.03
CDY35515	Canola	nucleus	43.7	32.5
Bra023749.1-P	Field mustard	nucleus	29.41	29.17
TraesCS1A01G218100.1	Wheat	nucleus	42.02	21.19
TraesCS6A01G243500.1	Wheat	nucleus	44.54	16.56
TraesCS6A01G243300.1	Wheat	nucleus	37.82	16.54
TraesCS2A01G417300.1	Wheat	nucleus	41.18	16.44
TraesCS2A01G417200.1	Wheat	nucleus	43.7	15.48
TraesCS2A01G417100.1	Wheat	nucleus	42.86	14.78

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190
PANTHER:PTHR31190:SF42	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS1A01G141800	EnsemblPlants:TraesCS1A01G141800.1	TIGR:cd00018
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:241377201..241377560

Molecular Weight (calculated)

12619.5 Da

IEP (calculated)

4.973

GRAVY (calculated)

-0.739

Length

119 amino acids

Sequence
(BLAST)

001: MEDDKKTKYR GVRTRPWGKF AAEIRDPERG GARVWLGTFD TAEEAARVYD RAAFAQRGAT AVLNFPGEAG GATGSSSSAP AGSGAGTGRG RGGTEKIELE
101: YLDDSLLDEL LDDSKYGGK

Best Arabidopsis Sequence Match ( AT3G23230.1 )
(BLAST)

001: MESSNRSSNN QSQDDKQARF RGVRRRPWGK FAAEIRDPSR NGARLWLGTF ETAEEAARAY DRAAFNLRGH LAILNFPNEY YPRMDDYSLR PPYASSSSSS
101: SSGSTSTNVS RQNQREVFEF EYLDDKVLEE LLDSEERKR

Arabidopsis Description

ERF098Ethylene-responsive transcription factor ERF098 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTC5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.