Factsheet for Bra012939.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02130	Canola	nucleus	100.0	100.0
CDY23053	Canola	nucleus	96.97	96.97
Bra035919.1-P	Field mustard	nucleus	87.88	85.71
AT5G61590.1	Thale cress	nucleus	86.87	85.57
Bra028690.1-P	Field mustard	nucleus	61.11	66.48
Bra009250.1-P	Field mustard	nucleus	70.2	65.88
KRG92180	Soybean	nucleus	41.41	41.21
Solyc05g052030.1.1	Tomato	nucleus	41.41	40.8
KRH34607	Soybean	nucleus	40.91	40.3
PGSC0003DMT400041328	Potato	nucleus	40.91	39.32
KRG90130	Soybean	nucleus	37.88	35.89
Bra023748.1-P	Field mustard	nucleus	24.75	35.51
Bra014925.1-P	Field mustard	nucleus	24.75	35.25
KRH33376	Soybean	nucleus	38.38	34.55
Bra027493.1-P	Field mustard	nucleus	22.73	34.09
Bra015310.1-P	Field mustard	nucleus	22.73	33.58
Bra032512.1-P	Field mustard	nucleus	23.23	33.33
Bra014924.1-P	Field mustard	nucleus	22.73	32.61
Bra032665.1-P	Field mustard	nucleus	25.25	31.45
GSMUA_Achr1P00480_001	Banana	nucleus	29.8	30.1
Bra029319.1-P	Field mustard	nucleus	32.32	28.7
Bra021047.1-P	Field mustard	nucleus	24.24	26.52
Bra012938.1-P	Field mustard	nucleus	33.84	25.97
Bra035732.1-P	Field mustard	nucleus	28.28	25.81
GSMUA_Achr11P...	Banana	nucleus	23.23	24.21
Bra022115.1-P	Field mustard	nucleus	27.78	24.02
Bra024954.1-P	Field mustard	nucleus	25.76	23.39
Bra017495.1-P	Field mustard	nucleus	28.79	23.27
GSMUA_Achr2P10490_001	Banana	nucleus	27.27	22.98
Bra040159.1-P	Field mustard	nucleus	27.78	22.92
Bra021048.1-P	Field mustard	nucleus	28.28	22.05
TraesCS1A01G218100.1	Wheat	nucleus	25.76	21.61
HORVU1Hr1G055710.1	Barley	nucleus	26.26	21.49
GSMUA_Achr7P06910_001	Banana	nucleus	25.25	21.19
Zm00001d029940_P001	Maize	nucleus	25.76	21.16
Bra004873.1-P	Field mustard	nucleus	24.24	20.69
Bra040158.1-P	Field mustard	nucleus	27.78	20.68
Bra017493.1-P	Field mustard	nucleus	30.3	20.41
TraesCS1B01G231500.1	Wheat	nucleus	26.26	20.31
Bra037630.1-P	Field mustard	nucleus	23.74	20.0
Bra024953.1-P	Field mustard	nucleus	29.8	20.0
Bra021049.1-P	Field mustard	nucleus	27.27	19.22
OQU92128	Sorghum	nucleus	26.26	18.77
Bra023749.1-P	Field mustard	nucleus	11.11	18.33
TraesCS6A01G243500.1	Wheat	nucleus	27.78	17.19
HORVU6Hr1G062430.1	Barley	nucleus	26.26	17.16
TraesCS6D01G225700.1	Wheat	nucleus	27.27	17.03
TraesCS6B01G280800.1	Wheat	nucleus	27.27	16.98
Zm00001d017466_P001	Maize	nucleus	27.78	16.72
TraesCS2B01G436100.1	Wheat	nucleus	28.28	16.42
TraesCS2A01G417200.1	Wheat	nucleus	27.78	16.37
TraesCS2D01G414300.1	Wheat	nucleus	28.28	16.33
Os02t0655200-02	Rice	nucleus	28.28	16.28
Os04t0547600-01	Rice	nucleus	26.77	16.16
TraesCS2B01G436200.1	Wheat	nucleus	27.27	16.12
TraesCS2D01G414500.1	Wheat	nucleus	27.27	16.07
TraesCS2A01G417100.1	Wheat	nucleus	27.78	15.94
OQU76347	Sorghum	nucleus	23.74	15.88
KXG26835	Sorghum	nucleus	26.77	15.87
KXG26836	Sorghum	nucleus	28.28	15.86
EES11214	Sorghum	nucleus	22.73	15.79
KXG31094	Sorghum	nucleus	27.27	15.79
Zm00001d051340_P001	Maize	nucleus	27.27	15.79
Zm00001d002761_P001	Maize	nucleus	24.75	15.56
EES11211	Sorghum	nucleus	25.25	15.48
Zm00001d002760_P001	Maize	nucleus	27.78	15.45
HORVU2Hr1G098140.2	Barley	mitochondrion, nucleus	15.15	8.38

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra012939	EnsemblPlants:Bra012939.1
EnsemblPlants:Bra012939.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4D8X9	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31677	PANTHER:PTHR31677:SF43	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002540588	SEG:seg

Description

AT5G61590 (E=2e-091) | AP2 domain-containing transcription factor family protein

Coordinates

chrA03:-:21413135..21413731

Molecular Weight (calculated)

22428.0 Da

IEP (calculated)

5.184

GRAVY (calculated)

-0.792

Length

198 amino acids

Sequence
(BLAST)

001: MATIEEISDL EKHLFEDLMI PDGFMEDFVF DDAAFFSGLW SLEPLNQVPK QEPSSPVLDP DSYVQEFLQM EAESSSSTTT TTTTSPEVET VSNRKRSKRA
101: EETRHYRGVR RRPWGKFAAE IRDPAKKGSR IWLGTFESDI DAARAYDHEA FKLRGRKAVL NFPLDAGKYD APVNSCRKRR RTDVPEPQGT ATSNSSSN

Best Arabidopsis Sequence Match ( AT5G61590.1 )
(BLAST)

001: METFEESSDL DVIQKHLFED LMIPDGFIED FVFDDTAFVS GLWSLEPFNP VPKLEPSSPV LDPDSYVQEI LQMEAESSSS SSTTTSPEVE TVSNRKKTKR
101: FEETRHYRGV RRRPWGKFAA EIRDPAKKGS RIWLGTFESD IDAARAYDYA AFKLRGRKAV LNFPLDAGKY DAPVNSCRKR RRTDVPQPQG TTTSTSSSSS
201: N

Arabidopsis Description

ERF107Ethylene-responsive transcription factor ERF107 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKG2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.