Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS7A01G111300.1 | |
| TraesCS7B01G009200.1 | |
| TraesCS7D01G106400.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61600.1 | TraesCS7A01G111300.1 | AT2G43790.1 | 19416906 |
| AT5G61600.1 | TraesCS7B01G009200.1 | AT2G43790.1 | 19416906 |
| AT5G61600.1 | TraesCS7D01G106400.1 | AT2G43790.1 | 19416906 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G243500.1 | Wheat | nucleus | 95.27 | 94.38 |
| TraesCS6B01G280800.1 | Wheat | nucleus | 94.64 | 94.34 |
| HORVU6Hr1G062430.1 | Barley | nucleus | 87.38 | 91.42 |
| Zm00001d017466_P001 | Maize | nucleus | 64.35 | 62.01 |
| Os02t0655200-02 | Rice | nucleus | 64.67 | 59.59 |
| KXG31094 | Sorghum | nucleus | 64.04 | 59.36 |
| Zm00001d051340_P001 | Maize | nucleus | 62.46 | 57.89 |
| GSMUA_Achr11P... | Banana | nucleus | 29.02 | 48.42 |
| TraesCS1D01G140900.1 | Wheat | nucleus | 17.03 | 45.38 |
| TraesCS4D01G313400.1 | Wheat | nucleus | 17.35 | 45.08 |
| TraesCS2D01G414300.1 | Wheat | nucleus | 47.0 | 43.44 |
| TraesCS2D01G414500.1 | Wheat | nucleus | 45.43 | 42.86 |
| TraesCS5D01G076200.1 | Wheat | nucleus | 14.2 | 37.19 |
| VIT_16s0013g01110.t01 | Wine grape | nucleus | 28.08 | 36.93 |
| Bra035732.1-P | Field mustard | nucleus | 24.92 | 36.41 |
| VIT_16s0013g01120.t01 | Wine grape | nucleus, plastid | 27.76 | 36.36 |
| TraesCS4D01G001200.1 | Wheat | nucleus | 14.51 | 35.94 |
| CDX71695 | Canola | nucleus | 24.92 | 35.91 |
| CDY05842 | Canola | nucleus | 24.92 | 35.91 |
| AT5G51190.1 | Thale cress | nucleus | 24.29 | 34.84 |
| VIT_16s0013g00900.t01 | Wine grape | nucleus | 24.92 | 34.5 |
| KRH77324 | Soybean | nucleus | 29.02 | 33.45 |
| KRH28164 | Soybean | nucleus | 29.02 | 33.33 |
| VIT_16s0013g01000.t01 | Wine grape | nucleus | 28.08 | 33.21 |
| VIT_16s0013g01090.t01 | Wine grape | nucleus | 27.44 | 32.95 |
| Solyc03g093540.1.1 | Tomato | nucleus | 23.03 | 32.02 |
| Solyc03g093550.1.1 | Tomato | nucleus | 23.97 | 31.54 |
| KRG92180 | Soybean | nucleus | 19.56 | 31.16 |
| PGSC0003DMT400090475 | Potato | nucleus | 23.97 | 31.02 |
| KRH57483 | Soybean | nucleus | 27.13 | 30.94 |
| VIT_16s0013g00990.t01 | Wine grape | nucleus | 27.13 | 30.94 |
| KRH04191 | Soybean | nucleus | 26.81 | 30.91 |
| KRH34607 | Soybean | nucleus | 19.56 | 30.85 |
| Bra028690.1-P | Field mustard | nucleus | 17.67 | 30.77 |
| CDY40779 | Canola | nucleus | 17.67 | 30.77 |
| VIT_16s0013g01060.t01 | Wine grape | nucleus | 26.81 | 30.69 |
| PGSC0003DMT400086995 | Potato | nucleus | 23.66 | 30.61 |
| VIT_16s0013g01050.t01 | Wine grape | nucleus | 26.5 | 30.32 |
| CDY38399 | Canola | nucleus | 24.61 | 30.23 |
| VIT_16s0013g00980.t01 | Wine grape | nucleus | 26.18 | 30.18 |
| VIT_16s0013g01070.t01 | Wine grape | nucleus | 26.18 | 30.18 |
| CDY41042 | Canola | nucleus | 27.76 | 30.03 |
| VIT_16s0013g00950.t01 | Wine grape | nucleus | 26.18 | 29.96 |
| PGSC0003DMT400067472 | Potato | nucleus | 26.18 | 29.86 |
| CDY25977 | Canola | nucleus | 27.76 | 29.73 |
| CDY64966 | Canola | nucleus | 24.92 | 29.7 |
| Bra040158.1-P | Field mustard | nucleus | 24.92 | 29.7 |
| Bra017493.1-P | Field mustard | nucleus | 27.44 | 29.59 |
| Solyc03g093560.1.1 | Tomato | nucleus | 22.71 | 29.51 |
| PGSC0003DMT400027937 | Potato | nucleus | 23.34 | 29.25 |
| KRG90129 | Soybean | nucleus | 24.29 | 28.95 |
| CDX76570 | Canola | nucleus | 25.55 | 28.93 |
| Solyc05g052030.1.1 | Tomato | nucleus | 18.3 | 28.86 |
| CDY14036 | Canola | nucleus | 17.03 | 28.57 |
| CDY64687 | Canola | nucleus | 25.87 | 28.57 |
| KRH33374 | Soybean | nucleus | 25.24 | 28.47 |
| AT5G47230.1 | Thale cress | nucleus | 26.81 | 28.33 |
| Solyc08g078190.1.1 | Tomato | nucleus | 28.71 | 28.26 |
| CDY60497 | Canola | nucleus | 18.3 | 28.16 |
| CDY16811 | Canola | nucleus | 17.67 | 27.86 |
| Bra024953.1-P | Field mustard | nucleus | 25.87 | 27.8 |
| Bra021049.1-P | Field mustard | nucleus | 24.61 | 27.76 |
| PGSC0003DMT400041328 | Potato | nucleus | 17.98 | 27.67 |
| AT4G17490.1 | Thale cress | nucleus | 24.61 | 27.66 |
| Bra035919.1-P | Field mustard | nucleus | 17.67 | 27.59 |
| AT5G07580.1 | Thale cress | golgi, nucleus, plastid | 17.98 | 27.54 |
| Bra009250.1-P | Field mustard | nucleus | 18.3 | 27.49 |
| CDY64666 | Canola | nucleus | 18.3 | 27.49 |
| AT5G61590.1 | Thale cress | nucleus | 17.35 | 27.36 |
| CDX87222 | Canola | nucleus | 17.35 | 27.36 |
| Bra012939.1-P | Field mustard | nucleus | 17.03 | 27.27 |
| CDY02130 | Canola | nucleus | 17.03 | 27.27 |
| CDY23053 | Canola | nucleus | 17.03 | 27.27 |
| TraesCS6D01G225500.1 | Wheat | nucleus | 23.34 | 27.11 |
| CDY42869 | Canola | nucleus | 18.61 | 26.94 |
| CDX77755 | Canola | nucleus | 26.18 | 26.77 |
| Bra029319.1-P | Field mustard | nucleus | 18.61 | 26.46 |
| KRG90130 | Soybean | nucleus | 17.35 | 26.32 |
| CDY27922 | Canola | nucleus | 15.77 | 26.32 |
| TraesCS2D01G414600.1 | Wheat | nucleus | 23.97 | 26.3 |
| CDY67760 | Canola | nucleus | 18.61 | 26.22 |
| VIT_16s0013g01030.t01 | Wine grape | cytosol | 9.15 | 26.13 |
| PGSC0003DMT400041327 | Potato | nucleus | 23.97 | 25.68 |
| KRH33376 | Soybean | nucleus | 17.03 | 24.55 |
| AT5G61600.1 | Thale cress | nucleus | 18.3 | 24.07 |
| VIT_16s0013g00970.t01 | Wine grape | nucleus | 23.66 | 23.73 |
| CDY02129 | Canola | nucleus | 18.3 | 23.11 |
| CDY23052 | Canola | nucleus | 18.61 | 23.05 |
| Bra012938.1-P | Field mustard | nucleus | 18.3 | 22.48 |
| Solyc05g052040.1.1 | Tomato | nucleus | 25.24 | 21.92 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF54 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS6D01G225700 | EnsemblPlants:TraesCS6D01G225700.1 | TIGR:cd00018 | SEG:seg | : |
Description
No Description!
Coordinates
chr6D:+:317413970..317414923
Molecular Weight (calculated)
33951.6 Da
IEP (calculated)
5.183
GRAVY (calculated)
-0.343
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFGGDMDDF SLQYIHEQLR LQLLGADPCG LLPLPAADDF AAQPDFIPAE FLPQPLPAFV DLTATDYADA AAYRAAAEPV MIRFGGEASP VSDPARRPSL
101: TISLPPASHA WAQAPVLAAE AAAAVDANDF RKYRGVRQRP WGKFAAEIRD PNKRGSRVWL GTYDTSIEAA RAYDRAAFRM RGAKAILNFP NEVGSRGATD
201: FVAPPPSQTA RAAPTSHNKR KRQEAAEPCV EVVRDATKHS KADASASPAS SLTSTPTSTV TSGTTTPSSS DAGGYYEMSF PLASPTSWTW DQLLAEGMFG
301: SLSPRQQLGS FPEVTVN
101: TISLPPASHA WAQAPVLAAE AAAAVDANDF RKYRGVRQRP WGKFAAEIRD PNKRGSRVWL GTYDTSIEAA RAYDRAAFRM RGAKAILNFP NEVGSRGATD
201: FVAPPPSQTA RAAPTSHNKR KRQEAAEPCV EVVRDATKHS KADASASPAS SLTSTPTSTV TSGTTTPSSS DAGGYYEMSF PLASPTSWTW DQLLAEGMFG
301: SLSPRQQLGS FPEVTVN
001: MATPNEVSAL WFIEKHLLDE ASPVATDPWM KHESSSATES SSDSSSIIFG SSSSSFAPID FSESVCKPEI IDLDTPRSME FLSIPFEFDS EVSVSDFDFK
101: PSNQNQNQFE PELKSQIRKP PLKISLPAKT EWIQFAAENT KPEVTKPVSE EEKKHYRGVR QRPWGKFAAE IRDPNKRGSR VWLGTFDTAI EAARAYDEAA
201: FRLRGSKAIL NFPLEVGKWK PRADEGEKKR KRDDDEKVTV VEKVLKTEQS VDVNGGETFP FVTSNLTELC DWDLTGFLNF PLLSPLSPHP PFGYSQLTVV
101: PSNQNQNQFE PELKSQIRKP PLKISLPAKT EWIQFAAENT KPEVTKPVSE EEKKHYRGVR QRPWGKFAAE IRDPNKRGSR VWLGTFDTAI EAARAYDEAA
201: FRLRGSKAIL NFPLEVGKWK PRADEGEKKR KRDDDEKVTV VEKVLKTEQS VDVNGGETFP FVTSNLTELC DWDLTGFLNF PLLSPLSPHP PFGYSQLTVV
Arabidopsis Description
ERF5ERF5 [Source:UniProtKB/TrEMBL;Acc:A0A178UKK9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.