Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS7A01G111300.1 | |
| TraesCS7B01G009200.1 | |
| TraesCS7D01G106400.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61600.1 | TraesCS7A01G111300.1 | AT2G43790.1 | 19416906 |
| AT5G61600.1 | TraesCS7B01G009200.1 | AT2G43790.1 | 19416906 |
| AT5G61600.1 | TraesCS7D01G106400.1 | AT2G43790.1 | 19416906 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G225700.1 | Wheat | nucleus | 94.34 | 94.64 |
| TraesCS6A01G243500.1 | Wheat | nucleus | 94.97 | 94.38 |
| HORVU6Hr1G062430.1 | Barley | nucleus | 88.36 | 92.74 |
| Zm00001d017466_P001 | Maize | nucleus | 64.15 | 62.01 |
| KXG31094 | Sorghum | nucleus | 64.15 | 59.65 |
| Os02t0655200-02 | Rice | nucleus | 64.15 | 59.3 |
| Zm00001d051340_P001 | Maize | nucleus | 62.26 | 57.89 |
| GSMUA_Achr11P... | Banana | nucleus | 29.87 | 50.0 |
| TraesCS1B01G158400.1 | Wheat | nucleus | 16.98 | 45.38 |
| TraesCS2B01G436100.1 | Wheat | nucleus | 47.48 | 44.28 |
| TraesCS4B01G316800.1 | Wheat | nucleus | 16.98 | 44.26 |
| TraesCS2B01G436200.1 | Wheat | nucleus | 44.97 | 42.69 |
| TraesCS5B01G072200.1 | Wheat | nucleus | 14.15 | 37.19 |
| VIT_16s0013g01110.t01 | Wine grape | nucleus | 27.99 | 36.93 |
| Bra035732.1-P | Field mustard | nucleus | 24.84 | 36.41 |
| VIT_16s0013g01120.t01 | Wine grape | nucleus, plastid | 27.67 | 36.36 |
| TraesCS6B01G069200.1 | Wheat | nucleus | 14.47 | 36.22 |
| CDX71695 | Canola | nucleus | 24.84 | 35.91 |
| CDY05842 | Canola | nucleus | 24.84 | 35.91 |
| TraesCS1B01G231500.1 | Wheat | nucleus | 28.62 | 35.55 |
| VIT_16s0013g00900.t01 | Wine grape | nucleus | 25.16 | 34.93 |
| AT5G51190.1 | Thale cress | nucleus | 24.21 | 34.84 |
| TraesCS4B01G001900.1 | Wheat | nucleus | 14.15 | 34.62 |
| KRH28164 | Soybean | nucleus | 28.93 | 33.33 |
| VIT_16s0013g01090.t01 | Wine grape | nucleus | 27.67 | 33.33 |
| KRH77324 | Soybean | nucleus | 28.62 | 33.09 |
| VIT_16s0013g01000.t01 | Wine grape | nucleus | 27.67 | 32.84 |
| Solyc03g093540.1.1 | Tomato | nucleus | 22.96 | 32.02 |
| Solyc03g093550.1.1 | Tomato | nucleus | 23.9 | 31.54 |
| CDY40779 | Canola | nucleus | 17.92 | 31.32 |
| Bra028690.1-P | Field mustard | nucleus | 17.92 | 31.32 |
| KRG92180 | Soybean | nucleus | 19.5 | 31.16 |
| PGSC0003DMT400090475 | Potato | nucleus | 23.9 | 31.02 |
| VIT_16s0013g00990.t01 | Wine grape | nucleus | 27.04 | 30.94 |
| KRH04191 | Soybean | nucleus | 26.73 | 30.91 |
| KRH34607 | Soybean | nucleus | 19.5 | 30.85 |
| VIT_16s0013g01060.t01 | Wine grape | nucleus | 26.73 | 30.69 |
| PGSC0003DMT400086995 | Potato | nucleus | 23.58 | 30.61 |
| KRH57483 | Soybean | nucleus | 26.73 | 30.58 |
| VIT_16s0013g01050.t01 | Wine grape | nucleus | 26.42 | 30.32 |
| CDY38399 | Canola | nucleus | 24.53 | 30.23 |
| VIT_16s0013g00980.t01 | Wine grape | nucleus | 26.1 | 30.18 |
| VIT_16s0013g01070.t01 | Wine grape | nucleus | 26.1 | 30.18 |
| VIT_16s0013g00950.t01 | Wine grape | nucleus | 26.1 | 29.96 |
| PGSC0003DMT400067472 | Potato | nucleus | 26.1 | 29.86 |
| CDY25977 | Canola | nucleus | 27.67 | 29.73 |
| CDY64966 | Canola | nucleus | 24.84 | 29.7 |
| Bra040158.1-P | Field mustard | nucleus | 24.84 | 29.7 |
| CDY41042 | Canola | nucleus | 27.36 | 29.69 |
| Bra017493.1-P | Field mustard | nucleus | 27.36 | 29.59 |
| Solyc03g093560.1.1 | Tomato | nucleus | 22.64 | 29.51 |
| PGSC0003DMT400027937 | Potato | nucleus | 23.27 | 29.25 |
| CDY14036 | Canola | nucleus | 17.3 | 29.1 |
| KRG90129 | Soybean | nucleus | 24.21 | 28.95 |
| CDX76570 | Canola | nucleus | 25.47 | 28.93 |
| CDY16811 | Canola | nucleus | 18.24 | 28.86 |
| Solyc05g052030.1.1 | Tomato | nucleus | 18.24 | 28.86 |
| CDY60497 | Canola | nucleus | 18.55 | 28.64 |
| CDY64687 | Canola | nucleus | 25.79 | 28.57 |
| Bra035919.1-P | Field mustard | nucleus | 18.24 | 28.57 |
| AT5G61590.1 | Thale cress | nucleus | 17.92 | 28.36 |
| AT5G47230.1 | Thale cress | nucleus | 26.73 | 28.33 |
| Solyc08g078190.1.1 | Tomato | nucleus | 28.62 | 28.26 |
| KRH33374 | Soybean | nucleus | 24.84 | 28.11 |
| AT5G07580.1 | Thale cress | golgi, nucleus, plastid | 18.24 | 28.02 |
| Bra009250.1-P | Field mustard | nucleus | 18.55 | 27.96 |
| CDY64666 | Canola | nucleus | 18.55 | 27.96 |
| CDX87222 | Canola | nucleus | 17.61 | 27.86 |
| Bra024953.1-P | Field mustard | nucleus | 25.79 | 27.8 |
| Bra021049.1-P | Field mustard | nucleus | 24.53 | 27.76 |
| PGSC0003DMT400041328 | Potato | nucleus | 17.92 | 27.67 |
| AT4G17490.1 | Thale cress | nucleus | 24.53 | 27.66 |
| CDY02130 | Canola | nucleus | 16.98 | 27.27 |
| Bra012939.1-P | Field mustard | nucleus | 16.98 | 27.27 |
| CDY42869 | Canola | nucleus | 18.55 | 26.94 |
| CDX77755 | Canola | nucleus | 26.1 | 26.77 |
| CDY23053 | Canola | nucleus | 16.67 | 26.77 |
| TraesCS6B01G281000.1 | Wheat | nucleus | 22.64 | 26.57 |
| Bra029319.1-P | Field mustard | nucleus | 18.55 | 26.46 |
| KRG90130 | Soybean | nucleus | 17.3 | 26.32 |
| CDY27922 | Canola | nucleus | 15.72 | 26.32 |
| CDY67760 | Canola | nucleus | 18.55 | 26.22 |
| VIT_16s0013g01030.t01 | Wine grape | cytosol | 9.12 | 26.13 |
| PGSC0003DMT400041327 | Potato | nucleus | 23.9 | 25.68 |
| TraesCS2B01G436300.1 | Wheat | nucleus | 22.96 | 25.17 |
| KRH33376 | Soybean | nucleus | 17.3 | 25.0 |
| AT5G61600.1 | Thale cress | nucleus | 18.24 | 24.07 |
| VIT_16s0013g00970.t01 | Wine grape | nucleus | 23.58 | 23.73 |
| CDY02129 | Canola | nucleus | 18.24 | 23.11 |
| CDY23052 | Canola | nucleus | 18.55 | 23.05 |
| Bra012938.1-P | Field mustard | nucleus | 18.24 | 22.48 |
| Solyc05g052040.1.1 | Tomato | nucleus | 25.16 | 21.92 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF54 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS6B01G280800 | EnsemblPlants:TraesCS6B01G280800.1 | TIGR:cd00018 | SEG:seg | : |
Description
No Description!
Coordinates
chr6B:-:506835389..506836345
Molecular Weight (calculated)
34098.8 Da
IEP (calculated)
5.182
GRAVY (calculated)
-0.396
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFGGDMDDF SLQYIHEQLR LQLLGADPCG LLPLPVADDF AAQPDFMPAE FLPQPLPAFV DLTASDYADA AAYRTAEPVM IRFGGEASPV SDPARRPSLT
101: ISLPPASHGW AQAPVPAAEA AAAVDANDFR KYRGVRQRPW GKFAAEIRDP NKRGSRVWLG TYDTSIEAAR AYDRAAFRMR GAKAILNFPN EVGSRGATDF
201: VAPPPPPPSQ TARAAPTSHN KRKRQEAAEP CAEVARNTTK YCKADASASP ASSLTSTPTS TVTSCTTTPS SSDAGGNYEM FPLASPTSWT WDQLLAEGMF
301: GGLSPRQQLG SFPEVTVN
101: ISLPPASHGW AQAPVPAAEA AAAVDANDFR KYRGVRQRPW GKFAAEIRDP NKRGSRVWLG TYDTSIEAAR AYDRAAFRMR GAKAILNFPN EVGSRGATDF
201: VAPPPPPPSQ TARAAPTSHN KRKRQEAAEP CAEVARNTTK YCKADASASP ASSLTSTPTS TVTSCTTTPS SSDAGGNYEM FPLASPTSWT WDQLLAEGMF
301: GGLSPRQQLG SFPEVTVN
001: MATPNEVSAL WFIEKHLLDE ASPVATDPWM KHESSSATES SSDSSSIIFG SSSSSFAPID FSESVCKPEI IDLDTPRSME FLSIPFEFDS EVSVSDFDFK
101: PSNQNQNQFE PELKSQIRKP PLKISLPAKT EWIQFAAENT KPEVTKPVSE EEKKHYRGVR QRPWGKFAAE IRDPNKRGSR VWLGTFDTAI EAARAYDEAA
201: FRLRGSKAIL NFPLEVGKWK PRADEGEKKR KRDDDEKVTV VEKVLKTEQS VDVNGGETFP FVTSNLTELC DWDLTGFLNF PLLSPLSPHP PFGYSQLTVV
101: PSNQNQNQFE PELKSQIRKP PLKISLPAKT EWIQFAAENT KPEVTKPVSE EEKKHYRGVR QRPWGKFAAE IRDPNKRGSR VWLGTFDTAI EAARAYDEAA
201: FRLRGSKAIL NFPLEVGKWK PRADEGEKKR KRDDDEKVTV VEKVLKTEQS VDVNGGETFP FVTSNLTELC DWDLTGFLNF PLLSPLSPHP PFGYSQLTVV
Arabidopsis Description
ERF5ERF5 [Source:UniProtKB/TrEMBL;Acc:A0A178UKK9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.