Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G225500.1 | Wheat | nucleus | 96.31 | 95.6 |
| TraesCS6A01G243300.1 | Wheat | nucleus | 93.73 | 93.38 |
| HORVU6Hr1G062380.3 | Barley | nucleus | 91.88 | 82.45 |
| Os02t0654700-01 | Rice | nucleus | 79.7 | 71.29 |
| TraesCS2B01G436300.1 | Wheat | nucleus | 72.32 | 67.59 |
| KRG92185 | Soybean | nucleus | 19.56 | 58.24 |
| GSMUA_Achr11P... | Banana | nucleus | 48.71 | 49.25 |
| Bra021047.1-P | Field mustard | nucleus | 31.37 | 46.96 |
| CDX76569 | Canola | nucleus | 30.63 | 46.11 |
| KRH04192 | Soybean | nucleus | 41.7 | 45.02 |
| CDY38401 | Canola | nucleus | 37.64 | 44.93 |
| KRH57484 | Soybean | nucleus | 42.07 | 44.71 |
| PGSC0003DMT400041331 | Potato | nucleus | 37.27 | 43.91 |
| VIT_16s0013g00890.t01 | Wine grape | nucleus | 38.38 | 43.33 |
| CDY65883 | Canola | nucleus | 35.79 | 43.11 |
| KRH77323 | Soybean | nucleus | 43.54 | 43.07 |
| CDY33523 | Canola | nucleus | 34.32 | 43.06 |
| CDY43434 | Canola | nucleus | 36.16 | 42.98 |
| VIT_02s0234g00130.t01 | Wine grape | nucleus | 44.65 | 42.91 |
| Solyc03g093610.1.1 | Tomato | nucleus | 38.01 | 42.56 |
| PGSC0003DMT400027932 | Potato | nucleus | 38.75 | 42.51 |
| CDX77750 | Canola | nucleus | 34.69 | 42.34 |
| Solyc05g052050.1.1 | Tomato | nucleus | 36.53 | 42.31 |
| CDY68787 | Canola | nucleus | 35.06 | 42.22 |
| PGSC0003DMT400005836 | Potato | nucleus | 31.0 | 42.21 |
| KRH28165 | Soybean | nucleus | 41.7 | 42.01 |
| Bra022115.1-P | Field mustard | nucleus | 35.42 | 41.92 |
| Bra024954.1-P | Field mustard | nucleus | 33.58 | 41.74 |
| CDY28965 | Canola | nucleus | 35.42 | 41.74 |
| Solyc08g007230.1.1 | Tomato | nucleus | 30.63 | 41.71 |
| Bra040159.1-P | Field mustard | nucleus | 36.9 | 41.67 |
| VIT_15s0021g01630.t01 | Wine grape | nucleus | 32.84 | 41.59 |
| KRH66522 | Soybean | nucleus | 29.89 | 41.54 |
| CDY25978 | Canola | nucleus | 36.53 | 41.25 |
| VIT_15s0021g01610.t01 | Wine grape | nucleus | 31.37 | 41.06 |
| VIT_15s0021g01600.t01 | Wine grape | nucleus | 31.0 | 40.98 |
| VIT_15s0021g01590.t01 | Wine grape | nucleus | 31.0 | 40.98 |
| Bra021048.1-P | Field mustard | nucleus | 38.01 | 40.55 |
| CDY27923 | Canola | nucleus | 38.01 | 40.39 |
| Bra017495.1-P | Field mustard | nucleus | 36.16 | 40.0 |
| PGSC0003DMT400067534 | Potato | nucleus | 34.32 | 39.91 |
| Bra032665.1-P | Field mustard | nucleus | 23.25 | 39.62 |
| AT5G47220.1 | Thale cress | nucleus | 35.42 | 39.51 |
| AT4G17500.1 | Thale cress | nucleus | 38.38 | 38.81 |
| GSMUA_Achr5P21050_001 | Banana | nucleus | 47.23 | 38.67 |
| TraesCS1B01G158400.1 | Wheat | nucleus | 16.97 | 38.66 |
| CDY38052 | Canola | nucleus | 23.62 | 38.55 |
| Solyc08g078170.1.1 | Tomato | nucleus | 33.58 | 38.4 |
| KRH48809 | Soybean | nucleus | 21.77 | 38.06 |
| PGSC0003DMT400067535 | Potato | nucleus | 32.84 | 38.03 |
| Solyc08g078180.1.1 | Tomato | nucleus | 32.1 | 37.18 |
| KRH66533 | Soybean | nucleus | 20.3 | 36.42 |
| TraesCS4B01G001900.1 | Wheat | nucleus | 17.34 | 36.15 |
| KRH01076 | Soybean | nucleus | 26.94 | 36.14 |
| TraesCS4B01G316800.1 | Wheat | nucleus | 16.24 | 36.07 |
| TraesCS5B01G072200.1 | Wheat | nucleus | 15.87 | 35.54 |
| KRH40171 | Soybean | nucleus | 26.57 | 35.47 |
| GSMUA_Achr1P00490_001 | Banana | nucleus | 26.57 | 35.12 |
| KRH01077 | Soybean | nucleus | 27.31 | 35.07 |
| AT2G44840.1 | Thale cress | nucleus | 29.15 | 34.96 |
| CDY30489 | Canola | nucleus | 29.89 | 34.91 |
| TraesCS6B01G069200.1 | Wheat | nucleus | 16.24 | 34.65 |
| CDX74692 | Canola | nucleus | 29.52 | 34.48 |
| Bra004873.1-P | Field mustard | nucleus | 29.52 | 34.48 |
| CDY56473 | Canola | nucleus | 29.15 | 34.2 |
| Bra037630.1-P | Field mustard | nucleus | 29.52 | 34.04 |
| CDY23459 | Canola | nucleus | 29.52 | 33.76 |
| KRH48815 | Soybean | nucleus | 29.89 | 33.75 |
| Solyc01g090310.2.1 | Tomato | nucleus | 22.14 | 33.33 |
| PGSC0003DMT400091474 | Potato | nucleus | 22.14 | 33.33 |
| KRH48811 | Soybean | nucleus | 25.09 | 33.17 |
| KRH01075 | Soybean | nucleus | 19.93 | 32.93 |
| KRH66529 | Soybean | nucleus | 22.51 | 32.28 |
| KRH66532 | Soybean | nucleus | 26.2 | 31.84 |
| KRH66525 | Soybean | nucleus | 22.88 | 31.47 |
| Solyc01g090320.2.1 | Tomato | nucleus | 21.4 | 31.18 |
| PGSC0003DMT400067020 | Potato | nucleus | 22.88 | 30.69 |
| Solyc01g090300.2.1 | Tomato | nucleus | 22.51 | 30.2 |
| PGSC0003DMT400066846 | Potato | nucleus | 24.35 | 29.73 |
| Solyc01g090340.2.1 | Tomato | nucleus | 23.99 | 29.68 |
| PGSC0003DMT400066853 | Potato | nucleus | 18.82 | 29.48 |
| PGSC0003DMT400018085 | Potato | nucleus | 20.3 | 29.1 |
| PGSC0003DMT400091002 | Potato | nucleus | 23.25 | 28.9 |
| Solyc05g050790.1.1 | Tomato | nucleus | 19.93 | 28.57 |
| Solyc01g090370.1.1 | Tomato | nucleus | 23.25 | 28.51 |
| PGSC0003DMT400067018 | Potato | nucleus | 23.25 | 27.88 |
| KRH66526 | Soybean | nucleus | 19.93 | 27.41 |
| PGSC0003DMT400097101 | Potato | nucleus | 22.14 | 27.4 |
| PGSC0003DMT400067013 | Potato | nucleus | 22.88 | 27.19 |
| TraesCS1B01G231500.1 | Wheat | nucleus | 22.51 | 23.83 |
| KRH66523 | Soybean | nucleus | 14.39 | 23.21 |
| TraesCS6B01G280800.1 | Wheat | nucleus | 26.57 | 22.64 |
| TraesCS2B01G436100.1 | Wheat | nucleus | 28.41 | 22.58 |
| TraesCS2B01G436200.1 | Wheat | nucleus | 26.57 | 21.49 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF65 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS6B01G281000 | EnsemblPlants:TraesCS6B01G281000.1 | TIGR:cd00018 | SEG:seg | : |
Description
No Description!
Coordinates
chr6B:+:507404338..507406207
Molecular Weight (calculated)
28666.8 Da
IEP (calculated)
6.026
GRAVY (calculated)
-0.262
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLLNPASEA AAAALDSIRQ QLLEEPMAPA RPAYCRSASF GSLVADQWSE SLPFRPNDAD DMVVYGALRD AFSCGWLPDG SFAAVKPEPL PSPDSYDGCC
101: LGSFLASPPG LDAPWAEEAE VAATASRGKH FRGVRQRPWG KFAAEIRDPA KNGARVWLGT FDSAEDAAVA YDRAAYRMRG SRALLNFPLR IGSEIAAAAG
201: QKRPSPQPAS PDSPPPSSSA PGSSKRRKRG EAAAESMSMA LVPPPPVQAP VQLTLPVQPW LATGAVQQLV S
101: LGSFLASPPG LDAPWAEEAE VAATASRGKH FRGVRQRPWG KFAAEIRDPA KNGARVWLGT FDSAEDAAVA YDRAAYRMRG SRALLNFPLR IGSEIAAAAG
201: QKRPSPQPAS PDSPPPSSSA PGSSKRRKRG EAAAESMSMA LVPPPPVQAP VQLTLPVQPW LATGAVQQLV S
001: MSMTADSQSD YAFLESIRRH LLGESEPILS ESTASSVTQS CVTGQSIKPV YGRNPSFSKL YPCFTESWGD LPLKENDSED MLVYGILNDA FHGGWEPSSS
101: SSDEDRSSFP SVKIETPESF AAVDSVPVKK EKTSPVSAAV TAAKGKHYRG VRQRPWGKFA AEIRDPAKNG ARVWLGTFET AEDAALAYDR AAFRMRGSRA
201: LLNFPLRVNS GEPDPVRIKS KRSSFSSSNE NGAPKKRRTV AAGGGMDKGL TVKCEVVEVA RGDRLLVL
101: SSDEDRSSFP SVKIETPESF AAVDSVPVKK EKTSPVSAAV TAAKGKHYRG VRQRPWGKFA AEIRDPAKNG ARVWLGTFET AEDAALAYDR AAFRMRGSRA
201: LLNFPLRVNS GEPDPVRIKS KRSSFSSSNE NGAPKKRRTV AAGGGMDKGL TVKCEVVEVA RGDRLLVL
Arabidopsis Description
ERF1AEthylene-responsive transcription factor 1A [Source:UniProtKB/Swiss-Prot;Acc:O80337]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.