Factsheet for Solyc01g090340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066846	Potato	nucleus	91.32	90.09
Solyc01g090320.2.1	Tomato	nucleus	46.58	54.84
KRG92185	Soybean	nucleus	21.46	51.65
Solyc01g090310.2.1	Tomato	nucleus	37.44	45.56
Solyc01g090300.2.1	Tomato	nucleus	37.44	40.59
KRH48809	Soybean	nucleus	28.31	40.0
Bra032665.1-P	Field mustard	nucleus	28.31	38.99
KRH66533	Soybean	nucleus	26.48	38.41
CDY38052	Canola	nucleus	28.77	37.95
KRH01075	Soybean	nucleus	28.31	37.8
Solyc08g007230.1.1	Tomato	nucleus	31.51	34.67
KRH01076	Soybean	nucleus	31.05	33.66
KRH01077	Soybean	nucleus	32.42	33.65
KRH40171	Soybean	nucleus	31.05	33.5
KRH48811	Soybean	nucleus	31.05	33.17
Solyc09g089910.1.1	Tomato	nucleus	21.46	32.87
KRH66529	Soybean	nucleus	28.31	32.8
Solyc03g005500.1.1	Tomato	nucleus	19.18	32.56
KRH66532	Soybean	nucleus	31.96	31.39
Solyc01g090370.1.1	Tomato	nucleus	31.51	31.22
KRH66525	Soybean	nucleus	27.85	30.96
Solyc05g050790.1.1	Tomato	nucleus	26.03	30.16
Solyc09g089920.1.1	Tomato	nucleus	20.55	29.61
Solyc09g066350.1.1	Tomato	nucleus	21.0	29.49
Solyc05g052050.1.1	Tomato	nucleus	31.51	29.49
KRH66526	Soybean	nucleus	26.48	29.44
CDY56473	Canola	nucleus	31.05	29.44
Solyc03g093610.1.1	Tomato	nucleus	31.96	28.93
Bra004873.1-P	Field mustard	nucleus	30.14	28.45
CDX74692	Canola	nucleus	30.14	28.45
GSMUA_Achr1P00490_001	Banana	nucleus	26.48	28.29
KRH66522	Soybean	nucleus	25.11	28.21
CDY30489	Canola	nucleus	29.68	28.02
AT2G44840.1	Thale cress	nucleus	28.77	27.88
Solyc08g078170.1.1	Tomato	nucleus	30.14	27.85
Solyc08g078180.1.1	Tomato	nucleus	29.68	27.78
Solyc02g077370.1.1	Tomato	nucleus	20.09	27.33
Bra037630.1-P	Field mustard	nucleus	29.22	27.23
GSMUA_Achr11P...	Banana	nucleus	32.88	26.87
VIT_16s0013g00890.t01	Wine grape	nucleus	29.22	26.67
CDY23459	Canola	nucleus	28.77	26.58
Zm00001d026191_P001	Maize	nucleus	31.51	25.56
KRH48815	Soybean	nucleus	27.4	25.0
Solyc05g052030.1.1	Tomato	nucleus	22.83	24.88
KRH66523	Soybean	nucleus	18.72	24.4
Zm00001d002762_P001	Maize	nucleus	31.05	24.37
TraesCS2D01G414600.1	Wheat	nucleus	31.96	24.22
TraesCS2B01G436300.1	Wheat	nucleus	31.96	24.14
Solyc03g093540.1.1	Tomato	nucleus	25.11	24.12
Os02t0654700-01	Rice	nucleus	33.33	24.09
TraesCS6B01G281000.1	Wheat	nucleus	29.68	23.99
OQU82076	Sorghum	nucleus	31.51	23.55
TraesCS6A01G243300.1	Wheat	nucleus	29.22	23.53
TraesCS2A01G417300.1	Wheat	nucleus	31.96	23.49
TraesCS6D01G225500.1	Wheat	nucleus	29.22	23.44
Solyc03g005510.1.1	Tomato	nucleus, plastid	18.72	23.43
Zm00001d017462_P001	Maize	nucleus	30.14	23.4
Solyc03g093550.1.1	Tomato	nucleus	25.11	22.82
HORVU6Hr1G062380.3	Barley	nucleus	31.05	22.52
EES05793	Sorghum	nucleus	31.96	22.51
Os04t0546800-01	Rice	nucleus	31.05	21.38
GSMUA_Achr5P21050_001	Banana	nucleus	31.96	21.15
Solyc03g093560.1.1	Tomato	nucleus	22.83	20.49
Solyc08g078190.1.1	Tomato	nucleus	26.94	18.32
Solyc05g052040.1.1	Tomato	nucleus	25.11	15.07

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:K4AYX5
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF41	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:Solyc01g090340.2	EnsemblPlants:Solyc01g090340.2.1	UniParc:UPI0002761D68	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:84028843..84029830

Molecular Weight (calculated)

24465.7 Da

IEP (calculated)

5.151

GRAVY (calculated)

-0.553

Length

219 amino acids

Sequence
(BLAST)

001: MSIVIDDDEI FSLPSLDELE SITHLLYDDD SDFFETLSPM SLDVTTLLPN IPTSNSIESP VTPEETKEPS VACEDAPQDW RRFIGVRRRQ WGTFSAEIRD
101: PNRRGARLWL GTYESPRDAA LAYDQAAYKI RGTKVRLNFP DLIGSDVPMP PRVTARRRTR SRSRSPEPLT TSSSSSSSSS SSSSSSSENG TKKRKIDLIN
201: SIAKSKLLCG MDLQMLIQM

Best Arabidopsis Sequence Match ( AT2G44840.1 )
(BLAST)

001: MSSSDSVNNG VNSRMYFRNP SFSNVILNDN WSDLPLSVDD SQDMAIYNTL RDAVSSGWTP SVPPVTSPAE ENKPPATKAS GSHAPRQKGM QYRGVRRRPW
101: GKFAAEIRDP KKNGARVWLG TYETPEDAAV AYDRAAFQLR GSKAKLNFPH LIGSCKYEPV RIRPRRRSPE PSVSDQLTSE QKRESHVDDG ESSLVVPELD
201: FTVDQFYFDG SLLMDQSECS YSDNRI

Arabidopsis Description

ERF13Ethylene-responsive transcription factor 13 [Source:UniProtKB/Swiss-Prot;Acc:Q8L9K1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.