Factsheet for Solyc01g090320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400097101	Potato	nucleus	81.72	69.41
PGSC0003DMT400066853	Potato	nucleus	60.22	64.74
PGSC0003DMT400067018	Potato	nucleus	62.9	51.77
KRG92185	Soybean	nucleus	25.27	51.65
Solyc01g090340.2.1	Tomato	nucleus	54.84	46.58
Solyc01g090310.2.1	Tomato	nucleus	44.09	45.56
KRH66533	Soybean	nucleus	33.33	41.06
Solyc01g090300.2.1	Tomato	nucleus	43.55	40.1
KRH48809	Soybean	nucleus	32.8	39.35
KRH01075	Soybean	nucleus	31.72	35.98
Bra032665.1-P	Field mustard	nucleus	30.65	35.85
KRH01076	Soybean	nucleus	38.71	35.64
KRH40171	Soybean	nucleus	37.63	34.48
KRH66529	Soybean	nucleus	34.95	34.39
CDY38052	Canola	nucleus	30.65	34.34
KRH48811	Soybean	nucleus	37.1	33.66
KRH66532	Soybean	nucleus	39.78	33.18
Solyc05g050790.1.1	Tomato	nucleus	33.33	32.8
Solyc08g007230.1.1	Tomato	nucleus	34.95	32.66
KRH01077	Soybean	nucleus	36.02	31.75
Solyc01g090370.1.1	Tomato	nucleus	36.56	30.77
Solyc09g089910.1.1	Tomato	nucleus	23.66	30.77
GSMUA_Achr1P00490_001	Banana	nucleus	33.87	30.73
KRH66526	Soybean	nucleus	32.26	30.46
Solyc09g066350.1.1	Tomato	nucleus	24.73	29.49
KRH66525	Soybean	nucleus	31.18	29.44
KRH66522	Soybean	nucleus	30.65	29.23
Solyc08g078170.1.1	Tomato	nucleus	36.56	28.69
Solyc03g005500.1.1	Tomato	nucleus	19.89	28.68
Solyc08g078180.1.1	Tomato	nucleus	36.02	28.63
Solyc02g077370.1.1	Tomato	nucleus	24.19	27.95
Solyc09g089920.1.1	Tomato	nucleus	22.58	27.63
CDY56473	Canola	nucleus	33.87	27.27
Bra004873.1-P	Field mustard	nucleus	33.87	27.16
CDX74692	Canola	nucleus	33.87	27.16
AT2G44840.1	Thale cress	nucleus	32.8	26.99
Solyc05g052030.1.1	Tomato	nucleus	29.03	26.87
CDY30489	Canola	nucleus	33.33	26.72
Bra037630.1-P	Field mustard	nucleus	32.8	25.96
Solyc03g093540.1.1	Tomato	nucleus	31.72	25.88
KRH66523	Soybean	nucleus	23.12	25.6
CDY23459	Canola	nucleus	32.26	25.32
Solyc05g052050.1.1	Tomato	nucleus	31.72	25.21
Solyc03g093610.1.1	Tomato	nucleus	32.8	25.21
Solyc03g093550.1.1	Tomato	nucleus	31.72	24.48
VIT_16s0013g00890.t01	Wine grape	nucleus	30.65	23.75
Solyc03g005510.1.1	Tomato	nucleus, plastid	22.04	23.43
KRH48815	Soybean	nucleus	30.11	23.33
GSMUA_Achr11P...	Banana	nucleus	33.33	23.13
Solyc03g093560.1.1	Tomato	nucleus	30.11	22.95
Zm00001d026191_P001	Maize	nucleus	32.26	22.22
TraesCS2D01G414600.1	Wheat	nucleus	33.87	21.8
TraesCS2B01G436300.1	Wheat	nucleus	33.87	21.72
TraesCS6A01G243300.1	Wheat	nucleus	31.72	21.69
Zm00001d002762_P001	Maize	nucleus	32.26	21.51
TraesCS6B01G281000.1	Wheat	nucleus	31.18	21.4
TraesCS6D01G225500.1	Wheat	nucleus	31.18	21.25
OQU82076	Sorghum	nucleus	33.33	21.16
TraesCS2A01G417300.1	Wheat	nucleus	33.87	21.14
Os02t0654700-01	Rice	nucleus	33.87	20.79
Zm00001d017462_P001	Maize	nucleus	31.18	20.57
HORVU6Hr1G062380.3	Barley	nucleus	32.26	19.87
Os04t0546800-01	Rice	nucleus	33.33	19.5
EES05793	Sorghum	nucleus	32.26	19.29
GSMUA_Achr5P21050_001	Banana	nucleus	31.18	17.52
Solyc08g078190.1.1	Tomato	nucleus	30.11	17.39
Solyc05g052040.1.1	Tomato	nucleus	31.72	16.16

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:K4AYX3	PFAM:PF00847	PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190
PANTHER:PTHR31190:SF41	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:Solyc01g090320.2	EnsemblPlants:Solyc01g090320.2.1	UniParc:UPI0002761D66
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:83980319..83980960

Molecular Weight (calculated)

21443.6 Da

IEP (calculated)

10.496

GRAVY (calculated)

-0.679

Length

186 amino acids

Sequence
(BLAST)

001: MNINMKFSLS DFDFLESVKQ HLLNDFDFFK YFSPMNLNNV ELPNSAISSL GSSLSIESHE KFEYEEEIIK GPNMVVARQK NTPEDWRRYI GVRRRQWGTF
101: TAEIRDPNKK GARLWLGTYE TPEDAALAYD QAAFKIRGSR ARVNFPHLIG SNMPKPARLK VRHHTSSLKP SSFSSTSLKN GIRKKK

Best Arabidopsis Sequence Match ( AT2G44840.1 )
(BLAST)

001: MSSSDSVNNG VNSRMYFRNP SFSNVILNDN WSDLPLSVDD SQDMAIYNTL RDAVSSGWTP SVPPVTSPAE ENKPPATKAS GSHAPRQKGM QYRGVRRRPW
101: GKFAAEIRDP KKNGARVWLG TYETPEDAAV AYDRAAFQLR GSKAKLNFPH LIGSCKYEPV RIRPRRRSPE PSVSDQLTSE QKRESHVDDG ESSLVVPELD
201: FTVDQFYFDG SLLMDQSECS YSDNRI

Arabidopsis Description

ERF13Ethylene-responsive transcription factor 13 [Source:UniProtKB/Swiss-Prot;Acc:Q8L9K1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.