Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037630.1-P | Field mustard | nucleus | 95.36 | 96.17 |
| CDY30489 | Canola | nucleus | 92.83 | 94.83 |
| CDY56473 | Canola | nucleus | 82.7 | 84.85 |
| CDX74692 | Canola | nucleus | 82.7 | 84.48 |
| AT2G44840.1 | Thale cress | nucleus | 75.53 | 79.2 |
| CDY38052 | Canola | nucleus | 30.8 | 43.98 |
| PGSC0003DMT400091474 | Potato | nucleus | 30.38 | 40.0 |
| CDX85071 | Canola | nucleus | 23.21 | 39.86 |
| Solyc01g090310.2.1 | Tomato | nucleus | 29.54 | 38.89 |
| CDX77537 | Canola | nucleus | 22.78 | 38.85 |
| CDX76569 | Canola | nucleus | 28.69 | 37.78 |
| CDY35516 | Canola | nucleus | 21.94 | 37.68 |
| CDX77538 | Canola | nucleus | 19.83 | 37.6 |
| VIT_16s0013g00890.t01 | Wine grape | nucleus | 37.97 | 37.5 |
| CDY32941 | Canola | nucleus | 20.68 | 37.12 |
| CDY50478 | Canola | nucleus | 20.68 | 37.12 |
| CDY10057 | Canola | nucleus | 21.1 | 37.04 |
| CDY18225 | Canola | nucleus | 20.68 | 36.84 |
| CDY60663 | Canola | nucleus | 20.68 | 36.57 |
| CDY65883 | Canola | nucleus | 34.6 | 36.44 |
| CDY53187 | Canola | nucleus | 20.68 | 36.3 |
| CDY38401 | Canola | nucleus | 34.6 | 36.12 |
| CDY33523 | Canola | nucleus | 31.22 | 34.26 |
| CDX77750 | Canola | nucleus | 32.07 | 34.23 |
| CDX85070 | Canola | nucleus | 19.83 | 34.06 |
| PGSC0003DMT400066853 | Potato | nucleus | 24.47 | 33.53 |
| CDY68787 | Canola | nucleus | 31.65 | 33.33 |
| PGSC0003DMT400067020 | Potato | nucleus | 28.27 | 33.17 |
| Solyc01g090300.2.1 | Tomato | nucleus | 28.27 | 33.17 |
| CDY27923 | Canola | nucleus | 35.44 | 32.94 |
| CDY43434 | Canola | nucleus | 31.65 | 32.89 |
| Solyc05g050790.1.1 | Tomato | nucleus | 25.74 | 32.28 |
| Solyc01g090320.2.1 | Tomato | nucleus | 25.32 | 32.26 |
| CDY28965 | Canola | nucleus | 31.22 | 32.17 |
| PGSC0003DMT400018085 | Potato | nucleus | 25.32 | 31.75 |
| GSMUA_Achr11P... | Banana | nucleus | 35.87 | 31.72 |
| Solyc01g090370.1.1 | Tomato | nucleus | 29.54 | 31.67 |
| CDY25978 | Canola | nucleus | 31.65 | 31.25 |
| PGSC0003DMT400091002 | Potato | nucleus | 28.69 | 31.19 |
| PGSC0003DMT400067013 | Potato | nucleus | 29.11 | 30.26 |
| GSMUA_Achr1P00490_001 | Banana | nucleus | 26.16 | 30.24 |
| TraesCS2D01G414600.1 | Wheat | nucleus | 36.71 | 30.1 |
| TraesCS2B01G436300.1 | Wheat | nucleus | 36.71 | 30.0 |
| TraesCS2A01G417300.1 | Wheat | nucleus | 37.13 | 29.53 |
| TraesCS6B01G281000.1 | Wheat | nucleus | 33.76 | 29.52 |
| Zm00001d017462_P001 | Maize | nucleus | 35.02 | 29.43 |
| PGSC0003DMT400097101 | Potato | nucleus | 27.0 | 29.22 |
| TraesCS6A01G243300.1 | Wheat | nucleus | 33.33 | 29.04 |
| Solyc01g090340.2.1 | Tomato | nucleus | 26.58 | 28.77 |
| TraesCS6D01G225500.1 | Wheat | nucleus | 32.91 | 28.57 |
| PGSC0003DMT400066846 | Potato | nucleus | 26.58 | 28.38 |
| Zm00001d026191_P001 | Maize | nucleus | 32.07 | 28.15 |
| PGSC0003DMT400067018 | Potato | nucleus | 26.58 | 27.88 |
| Zm00001d002762_P001 | Maize | nucleus | 32.49 | 27.6 |
| EES05793 | Sorghum | nucleus | 35.44 | 27.01 |
| CDY40779 | Canola | nucleus | 20.68 | 26.92 |
| HORVU6Hr1G062380.3 | Barley | nucleus | 34.18 | 26.82 |
| Os02t0654700-01 | Rice | nucleus | 34.18 | 26.73 |
| OQU82076 | Sorghum | nucleus | 32.91 | 26.62 |
| CDY14036 | Canola | nucleus | 20.25 | 25.4 |
| GSMUA_Achr5P21050_001 | Banana | nucleus | 35.44 | 25.38 |
| Os04t0546800-01 | Rice | nucleus | 33.76 | 25.16 |
| CDY08986 | Canola | nucleus | 22.36 | 25.0 |
| CDY35515 | Canola | nucleus | 16.88 | 25.0 |
| CDY16811 | Canola | nucleus | 21.1 | 24.88 |
| CDY60497 | Canola | nucleus | 21.1 | 24.27 |
| CDX87222 | Canola | nucleus | 20.25 | 23.88 |
| CDY02130 | Canola | nucleus | 19.83 | 23.74 |
| CDY23053 | Canola | nucleus | 19.83 | 23.74 |
| CDY64666 | Canola | nucleus | 21.1 | 23.7 |
| CDY42869 | Canola | nucleus | 21.52 | 23.29 |
| CDY05842 | Canola | nucleus | 21.52 | 23.18 |
| CDX71695 | Canola | nucleus | 21.1 | 22.73 |
| CDY67760 | Canola | nucleus | 21.52 | 22.67 |
| CDY02129 | Canola | nucleus | 22.36 | 21.12 |
| CDY23052 | Canola | nucleus | 22.78 | 21.09 |
| CDY38399 | Canola | nucleus | 20.68 | 18.99 |
| CDX76570 | Canola | nucleus | 22.36 | 18.93 |
| CDY64966 | Canola | nucleus | 21.1 | 18.8 |
| CDY25977 | Canola | nucleus | 22.36 | 17.91 |
| CDY41042 | Canola | nucleus | 21.94 | 17.75 |
| CDY64687 | Canola | nucleus | 19.83 | 16.38 |
| CDY27922 | Canola | nucleus | 12.66 | 15.79 |
| CDX77755 | Canola | nucleus | 19.83 | 15.16 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078GDM4 | UniProt:A0A078GDM4 | InterPro:AP2/ERF-transcript_factor | InterPro:AP2/ERF_dom |
| InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDY23459 | ProteinID:CDY23459 | ProteinID:CDY23459.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00022077001 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PIRSF:PIRSF038123 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF75 |
| SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0004EEB6A4 | SEG:seg | : | : |
Description
BnaC04g49870DBnaC04g49870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDM4]
Coordinates
chrLK032143:+:571915..572628
Molecular Weight (calculated)
26107.2 Da
IEP (calculated)
5.118
GRAVY (calculated)
-0.588
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGFDYNDLT NSADSVTNGV NPPVFYRNPS FSNVILNDSW SDLPLSVDDS QDMAIYNTLR DAFSSGWTPA VPPPVVAEEV KPTTATATAT AAASGSRPAP
101: RQKGMQYRGV RRRPWGKFAA EIRDPKKNGA RVWLGTYETP EDAAVAYDRA AFQLKGSKAK LNFPHLIGTC EYEPVRIRPR RRSPEPSVSD YSSPEQKSVG
201: HVEEGESSFV VPELGFTVDQ LYSDGGYLMD QSGYSYF
101: RQKGMQYRGV RRRPWGKFAA EIRDPKKNGA RVWLGTYETP EDAAVAYDRA AFQLKGSKAK LNFPHLIGTC EYEPVRIRPR RRSPEPSVSD YSSPEQKSVG
201: HVEEGESSFV VPELGFTVDQ LYSDGGYLMD QSGYSYF
001: MSSSDSVNNG VNSRMYFRNP SFSNVILNDN WSDLPLSVDD SQDMAIYNTL RDAVSSGWTP SVPPVTSPAE ENKPPATKAS GSHAPRQKGM QYRGVRRRPW
101: GKFAAEIRDP KKNGARVWLG TYETPEDAAV AYDRAAFQLR GSKAKLNFPH LIGSCKYEPV RIRPRRRSPE PSVSDQLTSE QKRESHVDDG ESSLVVPELD
201: FTVDQFYFDG SLLMDQSECS YSDNRI
101: GKFAAEIRDP KKNGARVWLG TYETPEDAAV AYDRAAFQLR GSKAKLNFPH LIGSCKYEPV RIRPRRRSPE PSVSDQLTSE QKRESHVDDG ESSLVVPELD
201: FTVDQFYFDG SLLMDQSECS YSDNRI
Arabidopsis Description
ERF13Ethylene-responsive transcription factor 13 [Source:UniProtKB/Swiss-Prot;Acc:Q8L9K1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.