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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY65883 Canola nucleus 89.87 90.67
CDY27923 Canola nucleus 84.14 74.9
CDX76569 Canola nucleus 58.59 73.89
AT4G17500.1 Thale cress nucleus 83.7 70.9
CDY33523 Canola nucleus 60.79 63.89
CDY68787 Canola nucleus 63.0 63.56
CDX77750 Canola nucleus 60.79 62.16
CDY43434 Canola nucleus 61.23 60.96
CDY28965 Canola nucleus 61.67 60.87
CDY25978 Canola nucleus 63.0 59.58
KRH04192 Soybean nucleus 56.83 51.39
KRH57484 Soybean nucleus 56.83 50.59
KRH77323 Soybean nucleus 57.71 47.81
KRH28165 Soybean nucleus 56.39 47.58
VIT_02s0234g00130.t01 Wine grape nucleus 56.83 45.74
GSMUA_Achr11P... Banana nucleus 47.58 40.3
CDY32941 Canola nucleus 23.35 40.15
CDX77537 Canola nucleus 24.23 39.57
CDY50478 Canola nucleus 22.91 39.39
CDX85071 Canola nucleus 23.79 39.13
CDY10057 Canola nucleus 22.91 38.52
CDY53187 Canola nucleus 22.91 38.52
CDX77538 Canola nucleus 21.15 38.4
CDY18225 Canola nucleus 22.47 38.35
CDY60663 Canola nucleus 22.47 38.06
CDY38052 Canola nucleus 27.75 37.95
CDY35516 Canola nucleus 22.91 37.68
TraesCS6B01G281000.1 Wheat nucleus 44.93 37.64
TraesCS6A01G243300.1 Wheat nucleus 44.93 37.5
TraesCS6D01G225500.1 Wheat nucleus 44.93 37.36
Zm00001d002762_P001 Maize nucleus 45.37 36.92
TraesCS2D01G414600.1 Wheat nucleus 46.7 36.68
Zm00001d026191_P001 Maize nucleus 43.61 36.67
TraesCS2B01G436300.1 Wheat nucleus 46.7 36.55
GSMUA_Achr1P00490_001 Banana nucleus 32.6 36.1
CDY30489 Canola nucleus 36.56 35.78
CDX74692 Canola nucleus 36.56 35.78
TraesCS2A01G417300.1 Wheat nucleus 46.26 35.23
CDY56473 Canola nucleus 35.68 35.06
OQU82076 Sorghum nucleus 44.93 34.81
Zm00001d017462_P001 Maize nucleus 43.17 34.75
Os02t0654700-01 Rice nucleus 46.26 34.65
CDY23459 Canola nucleus 36.12 34.6
CDX85070 Canola nucleus 20.7 34.06
HORVU6Hr1G062380.3 Barley nucleus 44.93 33.77
GSMUA_Achr5P21050_001 Banana nucleus 48.46 33.23
EES05793 Sorghum nucleus 45.37 33.12
Os04t0546800-01 Rice nucleus 45.81 32.7
CDY40779 Canola nucleus 25.55 31.87
CDY14036 Canola nucleus 25.11 30.16
CDY60497 Canola nucleus 26.87 29.61
CDY64666 Canola nucleus 26.87 28.91
CDX87222 Canola nucleus 25.11 28.36
CDY16811 Canola nucleus 25.11 28.36
CDY02130 Canola nucleus 24.23 27.78
CDY23053 Canola nucleus 24.23 27.78
CDY42869 Canola nucleus 25.11 26.03
CDX71695 Canola nucleus 25.11 25.91
CDY05842 Canola nucleus 25.11 25.91
CDY67760 Canola nucleus 25.11 25.33
CDY08986 Canola nucleus 22.91 24.53
CDY38399 Canola nucleus 27.31 24.03
CDY64687 Canola nucleus 29.96 23.69
CDY64966 Canola nucleus 27.75 23.68
CDY25977 Canola nucleus 30.4 23.31
CDY41042 Canola nucleus 29.96 23.21
CDY23052 Canola nucleus 25.55 22.66
CDY02129 Canola nucleus 24.67 22.31
CDX77755 Canola nucleus 30.4 22.26
CDX76570 Canola nucleus 27.31 22.14
CDY35515 Canola nucleus 15.42 21.88
CDY27922 Canola nucleus 17.18 20.53
Protein Annotations
MapMan:15.5.7.1Gene3D:3.30.730.10GO:A0A078HL60UniProt:A0A078HL60InterPro:AP2/ERF_domInterPro:AP2/ERF_dom_sf
EnsemblPlants:CDY38401ProteinID:CDY38401ProteinID:CDY38401.1InterPro:DNA-bd_dom_sfGO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00065829001InterPro:IPR001471InterPro:IPR036955PFAM:PF00847
PRINTS:PR00367PFscan:PS51032PANTHER:PTHR31190PANTHER:PTHR31190:SF79SMART:SM00380SUPFAM:SSF54171
UniParc:UPI0004EF2AD6SEG:seg::::
Description
BnaC01g10100DBnaC01g10100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HL60]
Coordinates
chrLK032423:+:180507..181367
Molecular Weight (calculated)
25167.7 Da
IEP (calculated)
9.532
GRAVY (calculated)
-0.559
Length
227 amino acids
Sequence
(BLAST)
001: MAVESDYAFL ESIRQYLLEE SELRLAESMV AQSGTTAHSV KPVYGRNSSF SKLYPCFSES WGDLPLKEND SEDMLVYGIL NDAFHGGWEP SFPTVKTENF
101: LAVDSVPAKK TSSVQAPVKG KHYRGVRQRP WGKFAAEIRD PAKNGARVWL GTFETAEDAA LAYDKAAFRM RGSRALLNFP LRVNSGEPDP VRIKSKRGSS
201: SENRAPKRRR TAGQGTDVGL NVKCETV
Best Arabidopsis Sequence Match ( AT4G17500.1 )
(BLAST)
001: MSMTADSQSD YAFLESIRRH LLGESEPILS ESTASSVTQS CVTGQSIKPV YGRNPSFSKL YPCFTESWGD LPLKENDSED MLVYGILNDA FHGGWEPSSS
101: SSDEDRSSFP SVKIETPESF AAVDSVPVKK EKTSPVSAAV TAAKGKHYRG VRQRPWGKFA AEIRDPAKNG ARVWLGTFET AEDAALAYDR AAFRMRGSRA
201: LLNFPLRVNS GEPDPVRIKS KRSSFSSSNE NGAPKKRRTV AAGGGMDKGL TVKCEVVEVA RGDRLLVL
Arabidopsis Description
ERF1AEthylene-responsive transcription factor 1A [Source:UniProtKB/Swiss-Prot;Acc:O80337]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.