Factsheet for PGSC0003DMT400066853

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400097101	Potato	nucleus	76.88	60.73
Solyc01g090320.2.1	Tomato	nucleus	64.74	60.22
KRG92185	Soybean	nucleus	26.59	50.55
PGSC0003DMT400067018	Potato	nucleus	62.43	47.79
PGSC0003DMT400066846	Potato	nucleus	57.8	45.05
PGSC0003DMT400091474	Potato	nucleus	39.31	37.78
PGSC0003DMT400067020	Potato	nucleus	42.2	36.14
KRH48809	Soybean	nucleus	28.32	31.61
PGSC0003DMT400018085	Potato	nucleus	34.1	31.22
KRH66533	Soybean	nucleus	27.17	31.13
KRH01075	Soybean	nucleus	28.9	30.49
Bra032665.1-P	Field mustard	nucleus	27.75	30.19
PGSC0003DMT400044383	Potato	nucleus	23.7	29.5
KRH66532	Soybean	nucleus	37.57	29.15
CDY38052	Canola	nucleus	27.75	28.92
KRH48811	Soybean	nucleus	34.1	28.78
KRH01076	Soybean	nucleus	33.53	28.71
PGSC0003DMT400026678	Potato	nucleus	26.01	28.66
KRH66525	Soybean	nucleus	32.37	28.43
KRH66529	Soybean	nucleus	30.64	28.04
PGSC0003DMT400034871	Potato	nucleus	20.23	28.0
PGSC0003DMT400091002	Potato	nucleus	35.26	27.98
KRH40171	Soybean	nucleus	32.37	27.59
KRH66526	Soybean	nucleus	31.21	27.41
PGSC0003DMT400097075	Potato	nucleus	23.12	27.4
KRH66522	Soybean	nucleus	30.64	27.18
KRH01077	Soybean	nucleus	32.95	27.01
PGSC0003DMT400041331	Potato	nucleus	35.84	26.96
GSMUA_Achr1P00490_001	Banana	nucleus	31.79	26.83
AT2G44840.1	Thale cress	nucleus	34.1	26.11
Bra004873.1-P	Field mustard	nucleus	34.68	25.86
CDX74692	Canola	nucleus	34.68	25.86
CDY56473	Canola	nucleus	34.1	25.54
PGSC0003DMT400067013	Potato	nucleus	33.53	25.44
CDY30489	Canola	nucleus	34.1	25.43
PGSC0003DMT400027932	Potato	nucleus	35.84	25.1
Bra037630.1-P	Field mustard	nucleus	33.53	24.68
VIT_16s0013g00890.t01	Wine grape	nucleus	34.1	24.58
CDY23459	Canola	nucleus	33.53	24.47
PGSC0003DMT400005836	Potato	nucleus	27.75	24.12
PGSC0003DMT400027849	Potato	nucleus	24.86	23.63
PGSC0003DMT400034984	Potato	nucleus	20.81	22.93
KRH48815	Soybean	nucleus	31.79	22.92
PGSC0003DMT400067535	Potato	nucleus	30.64	22.65
GSMUA_Achr11P...	Banana	nucleus	34.68	22.39
PGSC0003DMT400067534	Potato	nucleus	30.06	22.32
Zm00001d026191_P001	Maize	nucleus	33.53	21.48
PGSC0003DMT400041328	Potato	nucleus	24.86	20.87
PGSC0003DMT400086995	Potato	nucleus	28.9	20.41
PGSC0003DMT400090475	Potato	nucleus	28.32	20.0
PGSC0003DMT400027937	Potato	nucleus	28.9	19.76
Zm00001d002762_P001	Maize	nucleus	31.79	19.71
KRH66523	Soybean	nucleus	19.08	19.64
OQU82076	Sorghum	nucleus	32.95	19.45
TraesCS2D01G414600.1	Wheat	nucleus	31.79	19.03
TraesCS2B01G436300.1	Wheat	nucleus	31.79	18.97
TraesCS6B01G281000.1	Wheat	nucleus	29.48	18.82
Os02t0654700-01	Rice	nucleus	32.95	18.81
Zm00001d017462_P001	Maize	nucleus	30.64	18.79
TraesCS6A01G243300.1	Wheat	nucleus	29.48	18.75
TraesCS6D01G225500.1	Wheat	nucleus	29.48	18.68
TraesCS2A01G417300.1	Wheat	nucleus	31.79	18.46
PGSC0003DMT400067472	Potato	nucleus	28.9	17.99
PGSC0003DMT400041327	Potato	nucleus	30.64	17.91
EES05793	Sorghum	nucleus	31.21	17.36
Os04t0546800-01	Rice	nucleus	31.79	17.3
GSMUA_Achr5P21050_001	Banana	nucleus	32.95	17.22
HORVU6Hr1G062380.3	Barley	nucleus	30.06	17.22

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M1CGB2
PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400025991	PGSC:PGSC0003DMG400025991	EnsemblPlants:PGSC0003DMT400066853	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31190	PANTHER:PTHR31190:SF41	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000296606D	SEG:seg

Description

ERF1 [Source:PGSC_GENE;Acc:PGSC0003DMG400025991]

Coordinates

chr1:-:69416260..69416781

Molecular Weight (calculated)

19763.6 Da

IEP (calculated)

11.108

GRAVY (calculated)

-0.747

Length

173 amino acids

Sequence
(BLAST)

001: MNLSNVELPN SPNSSLGTSS SIKSKEEIIK GPMVVAREEN AWRDWRRYIG VRRRQWGTFT AEIRDPDRKG ARLWLGTYET LKDAALAYDR GSKARVNFPH
101: LIGSNMPKPA RLTVRHRTRS PKPSAISSTS SENGTRKRKI DLINSIAKTN FFCHSYLKGR EFSVQILEKY LPQ

Best Arabidopsis Sequence Match ( AT2G44840.1 )
(BLAST)

001: MSSSDSVNNG VNSRMYFRNP SFSNVILNDN WSDLPLSVDD SQDMAIYNTL RDAVSSGWTP SVPPVTSPAE ENKPPATKAS GSHAPRQKGM QYRGVRRRPW
101: GKFAAEIRDP KKNGARVWLG TYETPEDAAV AYDRAAFQLR GSKAKLNFPH LIGSCKYEPV RIRPRRRSPE PSVSDQLTSE QKRESHVDDG ESSLVVPELD
201: FTVDQFYFDG SLLMDQSECS YSDNRI

Arabidopsis Description

ERF13Ethylene-responsive transcription factor 13 [Source:UniProtKB/Swiss-Prot;Acc:Q8L9K1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.