Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
TraesCS7A01G111300.1 | |
TraesCS7B01G009200.1 | |
TraesCS7D01G106400.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G61600.1 | TraesCS7A01G111300.1 | AT2G43790.1 | 19416906 |
AT5G61600.1 | TraesCS7B01G009200.1 | AT2G43790.1 | 19416906 |
AT5G61600.1 | TraesCS7D01G106400.1 | AT2G43790.1 | 19416906 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS1A01G218100.1 | Wheat | nucleus | 83.2 | 90.25 |
HORVU1Hr1G055710.1 | Barley | nucleus | 83.59 | 88.43 |
Zm00001d029940_P001 | Maize | nucleus | 53.91 | 57.26 |
OQU92128 | Sorghum | nucleus | 56.64 | 52.35 |
TraesCS1B01G158400.1 | Wheat | nucleus | 19.92 | 42.86 |
TraesCS4B01G316800.1 | Wheat | nucleus | 19.92 | 41.8 |
GSMUA_Achr11P... | Banana | nucleus | 27.73 | 37.37 |
Bra035732.1-P | Field mustard | nucleus | 31.64 | 37.33 |
TraesCS6B01G069200.1 | Wheat | nucleus | 18.36 | 37.01 |
CDY05842 | Canola | nucleus | 31.64 | 36.82 |
CDX71695 | Canola | nucleus | 31.25 | 36.36 |
TraesCS5B01G072200.1 | Wheat | nucleus | 17.19 | 36.36 |
VIT_16s0013g01120.t01 | Wine grape | nucleus, plastid | 33.2 | 35.12 |
AT5G51190.1 | Thale cress | nucleus | 30.08 | 34.84 |
VIT_16s0013g01110.t01 | Wine grape | nucleus | 32.03 | 34.02 |
TraesCS4B01G001900.1 | Wheat | nucleus | 17.19 | 33.85 |
VIT_16s0013g00900.t01 | Wine grape | nucleus | 29.3 | 32.75 |
Bra028690.1-P | Field mustard | nucleus | 23.05 | 32.42 |
CDY40779 | Canola | nucleus | 23.05 | 32.42 |
CDY38399 | Canola | nucleus | 32.42 | 32.17 |
VIT_16s0013g01000.t01 | Wine grape | nucleus | 33.59 | 32.09 |
KRH77324 | Soybean | nucleus | 34.38 | 32.0 |
KRH28164 | Soybean | nucleus | 34.38 | 31.88 |
PGSC0003DMT400090475 | Potato | nucleus | 30.47 | 31.84 |
PGSC0003DMT400086995 | Potato | nucleus | 30.47 | 31.84 |
Solyc03g093560.1.1 | Tomato | nucleus | 30.08 | 31.56 |
TraesCS2B01G436200.1 | Wheat | nucleus | 41.02 | 31.34 |
PGSC0003DMT400027937 | Potato | nucleus | 30.86 | 31.23 |
Solyc03g093550.1.1 | Tomato | nucleus | 28.91 | 30.71 |
KRH57483 | Soybean | nucleus | 33.2 | 30.58 |
Bra040158.1-P | Field mustard | nucleus | 31.64 | 30.45 |
CDY64966 | Canola | nucleus | 31.64 | 30.45 |
CDY42869 | Canola | nucleus | 25.78 | 30.14 |
Bra029319.1-P | Field mustard | nucleus | 26.17 | 30.04 |
CDY27922 | Canola | nucleus | 22.27 | 30.0 |
Solyc03g093540.1.1 | Tomato | nucleus | 26.56 | 29.82 |
KRH04191 | Soybean | nucleus | 32.03 | 29.82 |
CDX76570 | Canola | nucleus | 32.42 | 29.64 |
CDY14036 | Canola | nucleus | 21.88 | 29.63 |
CDY67760 | Canola | nucleus | 25.78 | 29.33 |
TraesCS2B01G436100.1 | Wheat | nucleus | 39.06 | 29.33 |
VIT_16s0013g01090.t01 | Wine grape | nucleus | 30.08 | 29.17 |
VIT_16s0013g01070.t01 | Wine grape | nucleus | 31.25 | 29.09 |
VIT_16s0013g01060.t01 | Wine grape | nucleus | 31.25 | 28.88 |
Solyc05g052030.1.1 | Tomato | nucleus | 22.66 | 28.86 |
VIT_16s0013g00990.t01 | Wine grape | nucleus | 31.25 | 28.78 |
VIT_16s0013g00980.t01 | Wine grape | nucleus | 30.86 | 28.73 |
KRG90130 | Soybean | nucleus | 23.44 | 28.71 |
KRG92180 | Soybean | nucleus | 22.27 | 28.64 |
TraesCS6B01G280800.1 | Wheat | nucleus | 35.55 | 28.62 |
VIT_16s0013g01050.t01 | Wine grape | nucleus | 30.86 | 28.52 |
VIT_16s0013g00950.t01 | Wine grape | nucleus | 30.86 | 28.52 |
PGSC0003DMT400041327 | Potato | nucleus | 32.81 | 28.38 |
AT4G17490.1 | Thale cress | nucleus | 31.25 | 28.37 |
KRH34607 | Soybean | nucleus | 22.27 | 28.36 |
CDY64687 | Canola | nucleus | 31.64 | 28.22 |
PGSC0003DMT400041328 | Potato | nucleus | 22.66 | 28.16 |
CDY60497 | Canola | nucleus | 22.66 | 28.16 |
Bra021049.1-P | Field mustard | nucleus | 30.86 | 28.11 |
AT5G47230.1 | Thale cress | nucleus | 32.81 | 28.0 |
AT5G61600.1 | Thale cress | nucleus | 26.17 | 27.8 |
AT5G07580.1 | Thale cress | golgi, nucleus, plastid | 22.27 | 27.54 |
Bra009250.1-P | Field mustard | nucleus | 22.66 | 27.49 |
CDY64666 | Canola | nucleus | 22.66 | 27.49 |
Bra024953.1-P | Field mustard | nucleus | 31.64 | 27.46 |
KRG90129 | Soybean | nucleus | 28.52 | 27.44 |
KRH33376 | Soybean | nucleus | 23.44 | 27.27 |
VIT_16s0013g01030.t01 | Wine grape | cytosol | 11.72 | 27.03 |
Bra017493.1-P | Field mustard | nucleus | 30.86 | 26.87 |
CDY41042 | Canola | nucleus | 30.47 | 26.62 |
CDY23052 | Canola | nucleus | 26.56 | 26.56 |
AT5G61590.1 | Thale cress | nucleus | 20.7 | 26.37 |
CDY25977 | Canola | nucleus | 30.47 | 26.35 |
CDY02129 | Canola | nucleus | 25.78 | 26.29 |
CDY02130 | Canola | nucleus | 20.31 | 26.26 |
Bra012939.1-P | Field mustard | nucleus | 20.31 | 26.26 |
CDY23053 | Canola | nucleus | 20.31 | 26.26 |
Bra012938.1-P | Field mustard | nucleus | 26.17 | 25.97 |
CDY16811 | Canola | nucleus | 20.31 | 25.87 |
CDX77755 | Canola | nucleus | 31.25 | 25.81 |
Bra035919.1-P | Field mustard | nucleus | 20.31 | 25.62 |
KRH33374 | Soybean | nucleus | 27.34 | 24.91 |
CDX87222 | Canola | nucleus | 19.53 | 24.88 |
PGSC0003DMT400067472 | Potato | nucleus | 26.95 | 24.82 |
Solyc08g078190.1.1 | Tomato | nucleus | 30.47 | 24.22 |
TraesCS2B01G436300.1 | Wheat | nucleus | 26.95 | 23.79 |
Solyc05g052040.1.1 | Tomato | nucleus | 33.2 | 23.29 |
TraesCS6B01G281000.1 | Wheat | nucleus | 23.83 | 22.51 |
VIT_16s0013g00970.t01 | Wine grape | nucleus | 26.17 | 21.2 |
Protein Annotations
MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31677 | PANTHER:PTHR31677:SF43 | SMART:SM00380 |
SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS1B01G231500 | EnsemblPlants:TraesCS1B01G231500.1 | TIGR:cd00018 | SEG:seg | : |
Description
No Description!
Coordinates
chr1B:-:415743802..415744572
Molecular Weight (calculated)
28053.9 Da
IEP (calculated)
6.367
GRAVY (calculated)
-0.504
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFTHRHLDL IRAHLLDDLH ADALASSSGD SDSSPSSPPG WRRPALSVSL PPKPARTVLE RQPQQESCGY VEGQEEYDDD FRRYRGVRLR PWGKFAAEIR
101: DPARKGARVW LGTYDDAVEA ARAYDCAAFR LRGPKAILNF PNEVGTQSIQ WTSPAPLADT IAAVPTGGKR MRPAQEEERL RVVKKERLQL KEDDDEGAIA
201: ANYSAAGGGA PASWDGVAAA RDADIWEGLK VICSLPPLSP LSPYPHFAFP QLSVVN
101: DPARKGARVW LGTYDDAVEA ARAYDCAAFR LRGPKAILNF PNEVGTQSIQ WTSPAPLADT IAAVPTGGKR MRPAQEEERL RVVKKERLQL KEDDDEGAIA
201: ANYSAAGGGA PASWDGVAAA RDADIWEGLK VICSLPPLSP LSPYPHFAFP QLSVVN
001: MASSHQQQQE QDQSALDLIT QHLLTDFPSL DTFASTIHHC TTSTLSQRKP PLATIAVPTT APVVQENDQR HYRGVRRRPW GKYAAEIRDP NKKGVRVWLG
101: TFDTAMEAAR GYDKAAFKLR GSKAILNFPL EAGKHEDLGD NKKTISLKAK RKRQVTEDES QLISRKAVKR EEAQVQADAC PLTPSSWKGF WDGADSKDMG
201: IFSVPLLSPC PSLGHSQLVV T
101: TFDTAMEAAR GYDKAAFKLR GSKAILNFPL EAGKHEDLGD NKKTISLKAK RKRQVTEDES QLISRKAVKR EEAQVQADAC PLTPSSWKGF WDGADSKDMG
201: IFSVPLLSPC PSLGHSQLVV T
Arabidopsis Description
ERF105Ethylene-responsive transcription factor ERF105 [Source:UniProtKB/Swiss-Prot;Acc:Q8VY90]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.