Factsheet for VIT_16s0013g01110.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0013g01030.t01	Wine grape	cytosol	34.02	73.87
VIT_16s0013g00900.t01	Wine grape	nucleus	68.05	71.62
VIT_16s0013g00990.t01	Wine grape	nucleus	74.69	64.75
VIT_16s0013g01050.t01	Wine grape	nucleus	74.27	64.62
VIT_16s0013g01060.t01	Wine grape	nucleus	74.27	64.62
VIT_16s0013g00950.t01	Wine grape	nucleus	73.03	63.54
VIT_16s0013g01070.t01	Wine grape	nucleus	72.2	63.27
VIT_16s0013g00980.t01	Wine grape	nucleus	71.78	62.91
VIT_16s0013g01090.t01	Wine grape	nucleus	68.46	62.5
VIT_16s0013g01000.t01	Wine grape	nucleus	68.88	61.94
VIT_16s0013g01120.t01	Wine grape	nucleus, plastid	50.62	50.41
VIT_16s0013g00970.t01	Wine grape	nucleus	58.09	44.3
VIT_05s0049g00490.t01	Wine grape	nucleus	22.82	42.31
Solyc03g093550.1.1	Tomato	nucleus	41.91	41.91
GSMUA_Achr7P06910_001	Banana	nucleus	40.25	41.1
Solyc03g093540.1.1	Tomato	nucleus	38.59	40.79
GSMUA_Achr1P00480_001	Banana	nucleus	32.78	40.31
PGSC0003DMT400086995	Potato	nucleus	40.66	40.0
PGSC0003DMT400027937	Potato	nucleus	41.91	39.92
Solyc03g093560.1.1	Tomato	nucleus	40.25	39.75
VIT_07s0005g03210.t01	Wine grape	nucleus	23.65	39.31
PGSC0003DMT400090475	Potato	nucleus	39.83	39.18
KRG90129	Soybean	nucleus	42.74	38.72
GSMUA_Achr11P...	Banana	nucleus	29.46	37.37
CDY38399	Canola	nucleus	39.83	37.21
CDX76570	Canola	nucleus	43.15	37.14
VIT_07s0005g03220.t01	Wine grape	nucleus	23.24	36.84
CDY27922	Canola	nucleus	29.05	36.84
KRH33374	Soybean	nucleus	42.74	36.65
CDY64966	Canola	nucleus	40.25	36.47
Bra040158.1-P	Field mustard	nucleus	40.25	36.47
VIT_05s0049g00500.t01	Wine grape	nucleus	22.82	36.18
AT4G17490.1	Thale cress	nucleus	41.91	35.82
GSMUA_Achr2P10490_001	Banana	nucleus	34.85	35.74
Bra021049.1-P	Field mustard	nucleus	41.49	35.59
PGSC0003DMT400041327	Potato	nucleus	43.57	35.47
VIT_07s0005g03200.t01	Wine grape	nucleus	22.41	35.29
VIT_07s0005g03190.t01	Wine grape	nucleus	22.82	35.26
HORVU1Hr1G055710.1	Barley	nucleus	35.27	35.12
TraesCS1A01G218100.1	Wheat	nucleus	33.61	34.32
Zm00001d029940_P001	Maize	nucleus	34.02	34.02
VIT_10s0003g00580.t01	Wine grape	nucleus	21.58	33.99
TraesCS1B01G231500.1	Wheat	nucleus	34.02	32.03
OQU92128	Sorghum	nucleus	35.68	31.05
Zm00001d017466_P001	Maize	nucleus	41.91	30.7
HORVU6Hr1G062430.1	Barley	nucleus	37.76	30.03
Os04t0547600-01	Rice	nucleus	40.25	29.57
KXG31094	Sorghum	nucleus	41.91	29.53
Zm00001d051340_P001	Maize	nucleus	41.08	28.95
VIT_15s0021g01600.t01	Wine grape	nucleus	24.48	28.78
VIT_15s0021g01610.t01	Wine grape	nucleus	24.48	28.5
Solyc05g052040.1.1	Tomato	nucleus	43.15	28.49
Zm00001d002761_P001	Maize	nucleus	36.93	28.25
EES11211	Sorghum	nucleus	37.76	28.17
TraesCS6D01G225700.1	Wheat	nucleus	36.93	28.08
EES11214	Sorghum	nucleus	33.2	28.07
TraesCS6B01G280800.1	Wheat	nucleus	36.93	27.99
KXG26835	Sorghum	nucleus	38.59	27.84
TraesCS6A01G243500.1	Wheat	nucleus	36.93	27.81
TraesCS2A01G417200.1	Wheat	nucleus	38.59	27.68
VIT_15s0021g01630.t01	Wine grape	nucleus	24.48	27.57
Os02t0655200-02	Rice	nucleus	39.0	27.33
VIT_15s0021g01590.t01	Wine grape	nucleus	23.24	27.32
TraesCS2A01G417100.1	Wheat	nucleus	39.0	27.25
TraesCS2B01G436200.1	Wheat	nucleus	37.76	27.16
TraesCS2D01G414300.1	Wheat	nucleus	38.59	27.11
TraesCS2D01G414500.1	Wheat	nucleus	37.76	27.08
TraesCS2B01G436100.1	Wheat	nucleus	38.17	26.98
KXG26836	Sorghum	nucleus	36.51	24.93
Zm00001d002760_P001	Maize	nucleus	36.51	24.72
VIT_16s0013g00890.t01	Wine grape	nucleus	24.48	24.58
OQU76347	Sorghum	nucleus	29.05	23.65
VIT_02s0234g00130.t01	Wine grape	nucleus	26.97	23.05
HORVU2Hr1G098140.2	Barley	mitochondrion, nucleus	26.97	18.16

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ProteinID:CCB61213	ProteinID:CCB61213.1
InterPro:DNA-bd_dom_sf	UniProt:F6I2P6	EMBL:FN596738	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31677	PANTHER:PTHR31677:SF43	SMART:SM00380	SUPFAM:SSF54171	TIGR:TC56399	TIGR:TC62980
UniParc:UPI00021093F9	ArrayExpress:VIT_16s0013g01110	EnsemblPlantsGene:VIT_16s0013g01110	EnsemblPlants:VIT_16s0013g01110.t01	unigene:Vvi.24489	unigene:Vvi.7063
RefSeq:XP_002282245	RefSeq:XP_002282245.1	RefSeq:XP_002282253	RefSeq:XP_002282253.1	SEG:seg	:

Description

No Description!

Coordinates

chr16:-:7011487..7025010

Molecular Weight (calculated)

26988.5 Da

IEP (calculated)

6.981

GRAVY (calculated)

-0.720

Length

241 amino acids

Sequence
(BLAST)

001: MGEEASSLQL IHQLLLSDFD SMETFVSHAS HSLRSSASDS SFQTESPKPS RLSHRRPPLS ISLPPPPISH TSSSLDSGER RHYRGVRRRP WGKFAAEIRD
101: PNRRGSRVWL GTFETAIEAA RAYDRAAFKM RGSKAVLNFP LEAGNWSDSD PPATSIRKRE RESESEEREQ PEIKVLKQEE APPASDSPVV AEAANVLEAS
201: PLTPSSWRTV WEERDMEGAF HLPPLTPLSP HPWIGYSRLI S

Best Arabidopsis Sequence Match ( AT5G47230.1 )
(BLAST)

001: MATPNEVSAL WFIEKHLLDE ASPVATDPWM KHESSSATES SSDSSSIIFG SSSSSFAPID FSESVCKPEI IDLDTPRSME FLSIPFEFDS EVSVSDFDFK
101: PSNQNQNQFE PELKSQIRKP PLKISLPAKT EWIQFAAENT KPEVTKPVSE EEKKHYRGVR QRPWGKFAAE IRDPNKRGSR VWLGTFDTAI EAARAYDEAA
201: FRLRGSKAIL NFPLEVGKWK PRADEGEKKR KRDDDEKVTV VEKVLKTEQS VDVNGGETFP FVTSNLTELC DWDLTGFLNF PLLSPLSPHP PFGYSQLTVV

Arabidopsis Description

ERF5ERF5 [Source:UniProtKB/TrEMBL;Acc:A0A178UKK9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.