Factsheet for VIT_10s0003g00580.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g077370.1.1	Tomato	nucleus	62.09	59.01
KRH21338	Soybean	nucleus	53.59	55.78
PGSC0003DMT400027849	Potato	nucleus	62.09	52.2
GSMUA_Achr3P15550_001	Banana	nucleus	52.29	43.72
GSMUA_Achr6P27040_001	Banana	nucleus	47.71	42.94
VIT_05s0049g00490.t01	Wine grape	nucleus	33.33	39.23
VIT_07s0005g03200.t01	Wine grape	nucleus	35.29	35.29
VIT_07s0005g03190.t01	Wine grape	nucleus	35.95	35.26
KRH10962	Soybean	nucleus	62.09	35.19
VIT_07s0005g03210.t01	Wine grape	nucleus	32.03	33.79
VIT_05s0049g00500.t01	Wine grape	nucleus	32.03	32.24
VIT_07s0005g03220.t01	Wine grape	nucleus	30.72	30.92
VIT_15s0021g01610.t01	Wine grape	nucleus	40.52	29.95
VIT_15s0021g01600.t01	Wine grape	nucleus	39.22	29.27
VIT_15s0021g01590.t01	Wine grape	nucleus	39.22	29.27
VIT_16s0013g00890.t01	Wine grape	nucleus	45.1	28.75
VIT_02s0234g00130.t01	Wine grape	nucleus	50.98	27.66
VIT_15s0021g01630.t01	Wine grape	nucleus	37.25	26.64
VIT_16s0013g00900.t01	Wine grape	nucleus	32.68	21.83
VIT_16s0013g01110.t01	Wine grape	nucleus	33.99	21.58
VIT_16s0013g01120.t01	Wine grape	nucleus, plastid	33.99	21.49
VIT_16s0013g01090.t01	Wine grape	nucleus	36.6	21.21
VIT_16s0013g01000.t01	Wine grape	nucleus	36.6	20.9
VIT_16s0013g00980.t01	Wine grape	nucleus	35.29	19.64
VIT_16s0013g00990.t01	Wine grape	nucleus	35.29	19.42
VIT_16s0013g01050.t01	Wine grape	nucleus	34.64	19.13
VIT_16s0013g01060.t01	Wine grape	nucleus	34.64	19.13
VIT_16s0013g00950.t01	Wine grape	nucleus	34.64	19.13
VIT_16s0013g01070.t01	Wine grape	nucleus	33.99	18.91
VIT_16s0013g00970.t01	Wine grape	nucleus	35.95	17.41
VIT_16s0013g01030.t01	Wine grape	cytosol	7.84	10.81

Protein Annotations

EntrezGene:100264074	MapMan:15.5.7.1	Gene3D:3.30.730.10	EMBL:AM488026	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ProteinID:CAN84146	ProteinID:CAN84146.1	ProteinID:CCB55645	ProteinID:CCB55645.1	InterPro:DNA-bd_dom_sf
UniProt:F6HM57	EMBL:FN595992	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31190	PANTHER:PTHR31190:SF41	SMART:SM00380	SUPFAM:SSF54171	TIGR:TC63931	UniParc:UPI00015CCAEE
ArrayExpress:VIT_10s0003g00580	EnsemblPlantsGene:VIT_10s0003g00580	EnsemblPlants:VIT_10s0003g00580.t01	RefSeq:XP_010655476.1	SEG:seg	:

Description

No Description!

Coordinates

chr10:+:1822620..1823677

Molecular Weight (calculated)

16808.7 Da

IEP (calculated)

10.226

GRAVY (calculated)

-0.624

Length

153 amino acids

Sequence
(BLAST)

001: MAPTCQSELP LNENDSQDMV IYQVLNEAFA LNNSIIPPIK RQTTPTSSAL EPARTIAKKH YRGVRRRPWG KYAAEIRDSA KHGARTWLGT FETAEEAALA
101: YDRAAFRMRG SKALLNFPAE VVAASSQRTP KPNLSSENLK RDASNSSNSS AAS

Best Arabidopsis Sequence Match ( AT4G17500.1 )
(BLAST)

001: MSMTADSQSD YAFLESIRRH LLGESEPILS ESTASSVTQS CVTGQSIKPV YGRNPSFSKL YPCFTESWGD LPLKENDSED MLVYGILNDA FHGGWEPSSS
101: SSDEDRSSFP SVKIETPESF AAVDSVPVKK EKTSPVSAAV TAAKGKHYRG VRQRPWGKFA AEIRDPAKNG ARVWLGTFET AEDAALAYDR AAFRMRGSRA
201: LLNFPLRVNS GEPDPVRIKS KRSSFSSSNE NGAPKKRRTV AAGGGMDKGL TVKCEVVEVA RGDRLLVL

Arabidopsis Description

ERF1AEthylene-responsive transcription factor 1A [Source:UniProtKB/Swiss-Prot;Acc:O80337]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.