CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57054	Soybean	nucleus	97.19	97.44
GSMUA_Achr2P14410_001	Banana	cytosol	35.2	89.61
VIT_17s0000g08140.t01	Wine grape	cytosol	82.4	84.78
KRH63524	Soybean	cytosol	83.16	84.46
KRH54415	Soybean	cytosol	82.91	84.2
KRG93329	Soybean	cytosol	78.83	84.2
KRH20309	Soybean	cytosol	78.57	84.15
CDY21438	Canola	cytosol	79.34	80.57
Solyc03g114210.2.1	Tomato	endoplasmic reticulum	80.36	80.56
PGSC0003DMT400063241	Potato	cytosol	80.36	80.56
Bra000605.1-P	Field mustard	cytosol	78.83	80.47
CDY68821	Canola	cytosol	78.83	80.47
AT5G50000.1	Thale cress	cytosol	78.83	80.26
Solyc06g071410.2.1	Tomato	cytosol	80.61	80.2
PGSC0003DMT400069449	Potato	cytosol	80.1	80.1
EES19998	Sorghum	cytosol	75.77	78.36
Os05t0577700-01	Rice	plasma membrane	75.51	77.69
HORVU1Hr1G091230.1	Barley	cytosol	72.45	77.6
GSMUA_Achr4P24420_001	Banana	cytosol	77.55	77.55
EES01155	Sorghum	cytosol	75.51	77.28
TraesCS1B01G446500.1	Wheat	cytosol	72.96	76.88
TraesCS3A01G230500.1	Wheat	cytosol	74.74	75.91
TraesCS3D01G222800.1	Wheat	cytosol	74.49	75.84
TraesCS3B01G259800.1	Wheat	cytosol	74.49	75.84
Os01t0641000-01	Rice	cytosol, plasma membrane	75.0	75.77
TraesCS1D01G423800.1	Wheat	cytosol	71.94	75.4
TraesCS1A01G416200.1	Wheat	cytosol	72.45	75.33
KRH77828	Soybean	cytosol	64.54	65.37
KRH27659	Soybean	cytosol	64.03	65.19
KRH35488	Soybean	plastid	19.13	61.98
KRG91343	Soybean	cytosol	57.14	58.79
HORVU3Hr1G057440.1	Barley	cytosol	74.49	58.52
HORVU3Hr1G049370.1	Barley	vacuole	21.43	52.83
Zm00001d017226_P003	Maize	plasma membrane	19.13	25.25

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100788033	MapMan:18.4.1.30	MapMan:26.2.1.4	Gene3D:3.30.200.20	EMBL:ACUP02010343
EnsemblPlantsGene:GLYMA_17G090600	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004871
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464
GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0035556	UniProt:I1MTI4	InterPro:IPR000719
EnsemblPlants:KRH03312	ProteinID:KRH03312	ProteinID:KRH03312.1	InterPro:Kinase-like_dom_sf	PFAM:PF07714	PIRSF:PIRSF000654
PRINTS:PR00109	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR44084	PANTHER:PTHR44084:SF5	InterPro:Prot_kinase_dom
SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000233F1FA	:

Description

hypothetical protein

Coordinates

chr17:+:7067061..7072129

Molecular Weight (calculated)

43727.4 Da

IEP (calculated)

7.709

GRAVY (calculated)

-0.397

Length

392 amino acids

Sequence
(BLAST)

001: MKENSDGFVR ADQIDLKSID EQLERHLSKV LTIEKKKRSE GGEEDAAAHD HVHTTSATAS PKFSHASSAA RVINFKKKKQ DWEIDPSKLI IKTVIARGTF
101: GTVHRGVYDT QDVAVKLLDW GEEGQRTEAE IASLRAAFTQ EVAVWHKLDH PNVTKFIGAT MGSSELQIQT DNGLIGMPSN VCCVVVEYLA GGNLKQYLIK
201: NRRRKLALKV VIQLALDLAR GLSYLHSQKI VHRDVKTENM LLDKTRTVKI ADFGVARVEA SNPNDMTGET GTLGYMAPEV LNGNPYNRKC DVYSFGICLW
301: EIYCCDMPYP DLSFSEITSA VVRQNLRPEV PRCCPSSLAN VMKKCWDASP DKRPEMDEVV SMLEAIDTSK GGGMIPHDQQ QGCFCFRKHR GP

Best Arabidopsis Sequence Match ( AT5G50000.1 )
(BLAST)

001: MKEGKDGFVR ADQIDLKSLD EQLERHLSRA LTLEKNKKKD EEDTTAVAIG GSASSSPVTL NGGGFVGKRK QRLEWEIDPS KLIIKTVLAR GTFGTVHRGI
101: YDGQDVAVKL LDWGEEGHRS EAEIVSLRAD FAQEVAVWHK LDHPNVTKFI GATMGASGLQ LQTESGPLAM PNNICCVVVE YLPGGALKSY LIKNRRRKLT
201: FKIVVQLALD LARGLSYLHS QKIVHRDVKT ENMLLDKTRT VKIADFGVAR VEASNPNDMT GETGTLGYMA PEVLNGNPYN RKCDVYSFGI CLWEIYCCDM
301: PYPDLTFSEV TSAVVRQNLR PDIPRCCPSA LAAVMKRCWD ANPDKRPEMD EVVPMLESID TTKGGGMIPN DQQQGCLCFR RKRGP

Arabidopsis Description

Protein kinase [Source:UniProtKB/TrEMBL;Acc:Q9FGB1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.