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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytoskeleton, cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
endoplasmic reticulum: 29145071
msms PMID: 29145071 doi
P Ibort, H Imai, M Uemura, R Aroca
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400063241 Potato cytosol 100.0 100.0
GSMUA_Achr2P14410_001 Banana cytosol 35.04 88.96
Solyc06g071410.2.1 Tomato cytosol 89.51 88.83
VIT_17s0000g08140.t01 Wine grape cytosol 84.14 86.35
KRH63524 Soybean cytosol 81.59 82.64
KRH54415 Soybean cytosol 81.59 82.64
AT5G50000.1 Thale cress cytosol 80.56 81.82
Bra000605.1-P Field mustard cytosol 80.05 81.51
CDY68821 Canola cytosol 80.05 81.51
Solyc12g062280.1.1 Tomato cytosol 75.45 81.49
CDY21438 Canola cytosol 80.05 81.09
EES19998 Sorghum cytosol 78.52 81.0
KRH57054 Soybean nucleus 80.82 80.82
KRH03312 Soybean nucleus 80.56 80.36
EES01155 Sorghum cytosol 78.52 80.16
HORVU1Hr1G091230.1 Barley cytosol 74.68 79.78
Os05t0577700-01 Rice plasma membrane 76.98 79.0
TraesCS1B01G446500.1 Wheat cytosol 74.94 78.76
GSMUA_Achr4P24420_001 Banana cytosol 78.77 78.57
TraesCS3B01G259800.1 Wheat cytosol 76.98 78.18
TraesCS3D01G222800.1 Wheat cytosol 76.98 78.18
TraesCS3A01G230500.1 Wheat cytosol 76.73 77.72
Os01t0641000-01 Rice cytosol, plasma membrane 76.98 77.58
TraesCS1D01G423800.1 Wheat cytosol 73.91 77.27
TraesCS1A01G416200.1 Wheat cytosol 73.91 76.66
Solyc10g045270.1.1 Tomato cytosol 44.76 71.43
Solyc09g082470.2.1 Tomato cytosol 63.94 63.29
HORVU3Hr1G057440.1 Barley cytosol 76.98 60.32
Solyc04g026210.2.1 Tomato cytosol 20.72 58.27
HORVU3Hr1G049370.1 Barley vacuole 21.99 54.09
Solyc03g121780.1.1 Tomato cytosol 37.34 46.95
Solyc04g026230.1.1 Tomato cytosol 14.07 45.08
Solyc12g016020.1.1 Tomato cytosol 6.39 44.64
Solyc12g016040.1.1 Tomato extracellular, plasma membrane 6.39 33.33
Zm00001d017226_P003 Maize plasma membrane 19.44 25.59
Solyc10g045280.1.1 Tomato cytosol 2.81 9.09
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.30MapMan:26.2.1.4Gene3D:3.30.200.20ncoils:CoilGO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0004871GO:GO:0005488GO:GO:0005524
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0006464GO:GO:0006468GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016301GO:GO:0016740
GO:GO:0019538GO:GO:0035556InterPro:IPR000719UniProt:K4BKS3InterPro:Kinase-like_dom_sfPFAM:PF07714
PIRSF:PIRSF000654PRINTS:PR00109ScanProsite:PS00108PFscan:PS50011PANTHER:PTHR44084PANTHER:PTHR44084:SF5
InterPro:Prot_kinase_domSMART:SM00220SUPFAM:SSF56112InterPro:Ser-Thr/Tyr_kinase_cat_domInterPro:Ser/Thr_kinase_ASEnsemblPlantsGene:Solyc03g114210.2
EnsemblPlants:Solyc03g114210.2.1UniParc:UPI00027681C4SEG:seg:::
Description
No Description!
Coordinates
chr3:-:64203776..64208133
Molecular Weight (calculated)
43348.0 Da
IEP (calculated)
7.851
GRAVY (calculated)
-0.318
Length
391 amino acids
Sequence
(BLAST)
001: MEKGSDGFVR ADQIDLKSLD EQLERHLNRA LTMEKTNNKK KPLDDSCINY STATAAAATV TAAAASLSLS SSVKPRQRHD WEIDPSKLII KTVIARGTFG
101: TVHRGVYDGI DVAVKLLDWG EEGHRTDAEI ASLRAAFTQE VSVWHKLDHP NVTKFIGATM GSSGLNIQTE NGHIGMPSNI CCVVVEYLPG GALKSYLIKN
201: RRRKLAFKVV VQMALDMARG LSYLHSQKIV HRDVKTENML LDKTRTVKIA DFGVARVEAS NPNDMTGETG TLGYMAPEVL NGNPYNRKCD VYSFGICVWE
301: IYCCDMPYPD LSFSEVTSAV VRQNLRPDIP RCCPSSLANV MKRCWDANPD KRPEMDEVVS MIEAIDTSKG GGMIPVDQQQ GCFCFRRHRG P
Best Arabidopsis Sequence Match ( AT5G50000.1 )
(BLAST)
001: MKEGKDGFVR ADQIDLKSLD EQLERHLSRA LTLEKNKKKD EEDTTAVAIG GSASSSPVTL NGGGFVGKRK QRLEWEIDPS KLIIKTVLAR GTFGTVHRGI
101: YDGQDVAVKL LDWGEEGHRS EAEIVSLRAD FAQEVAVWHK LDHPNVTKFI GATMGASGLQ LQTESGPLAM PNNICCVVVE YLPGGALKSY LIKNRRRKLT
201: FKIVVQLALD LARGLSYLHS QKIVHRDVKT ENMLLDKTRT VKIADFGVAR VEASNPNDMT GETGTLGYMA PEVLNGNPYN RKCDVYSFGI CLWEIYCCDM
301: PYPDLTFSEV TSAVVRQNLR PDIPRCCPSA LAAVMKRCWD ANPDKRPEMD EVVPMLESID TTKGGGMIPN DQQQGCLCFR RKRGP
Arabidopsis Description
Protein kinase [Source:UniProtKB/TrEMBL;Acc:Q9FGB1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.