CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32669	Soybean	nucleus	89.74	94.59
VIT_08s0007g03790.t01	Wine grape	nucleus, plastid	51.28	47.17
KRH25177	Soybean	nucleus	44.62	37.99
KRH30499	Soybean	nucleus	45.64	37.71
KRH22718	Soybean	nucleus	45.13	36.21
KRG91437	Soybean	nucleus	37.95	35.75
KRH26586	Soybean	nucleus	40.51	35.75
KRH35383	Soybean	nucleus	37.44	35.61
KRH26588	Soybean	nucleus	43.59	33.73
KRH09144	Soybean	nucleus	37.95	32.03
KRH77483	Soybean	nucleus	33.85	29.2
KRH57258	Soybean	nucleus	37.95	29.13
KRH03987	Soybean	nucleus	37.44	28.63
KRH38616	Soybean	plastid	38.46	22.94

Protein Annotations

EntrezGene:100778541	MapMan:15.5.7.2	Gene3D:3.30.730.10	EMBL:ACUP02008230	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_13G152000	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
UniProt:I1LZG3	InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:KRH20038	ProteinID:KRH20038	ProteinID:KRH20038.1
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31985	PANTHER:PTHR31985:SF77	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI000233B0AF	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:26641277..26641864

Molecular Weight (calculated)

21801.4 Da

IEP (calculated)

7.046

GRAVY (calculated)

-0.585

Length

195 amino acids

Sequence
(BLAST)

001: MQKRRAGRKK FHETRHPVYK GVRQRNGKWV CELRQPNNKN ARVWLGTFTH PDMAAIAYDV AALAFKGDNA SLNFPHAATS LPRLNSRTCS VRAIQFAATQ
101: AAEKHFSCAE SQQLQREGSL EGSGSGSFSL DEDSSEFSSK EGGSERFFWD EEEVFNMPEL LNSMAEALII TPPALERGFN WVGGETTVDL TLWSN

Best Arabidopsis Sequence Match ( AT5G51990.1 )
(BLAST)

001: MNPFYSTFPD SFLSISDHRS PVSDSSECSP KLASSCPKKR AGRKKFRETR HPIYRGVRQR NSGKWVCEVR EPNKKSRIWL GTFPTVEMAA RAHDVAALAL
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE

Arabidopsis Description

DREB1DC-repeat binding factor 4 [Source:UniProtKB/TrEMBL;Acc:B2BJ26]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.