CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22718	Soybean	nucleus	80.56	83.54
KRH25177	Soybean	nucleus	55.56	61.14
KRH30499	Soybean	nucleus	56.75	60.59
Solyc01g009440.1.1	Tomato	nucleus	43.25	51.9
PGSC0003DMT400088795	Potato	nucleus	42.86	51.18
KRH26586	Soybean	nucleus	43.65	49.77
KRH32669	Soybean	nucleus	32.94	44.86
KRH20038	Soybean	nucleus	33.73	43.59
KRH35383	Soybean	nucleus	33.33	40.98
KRG91437	Soybean	nucleus	33.33	40.58
KRH09144	Soybean	nucleus	34.92	38.1
KRH77483	Soybean	nucleus	32.94	36.73
KRH57258	Soybean	nucleus	35.32	35.04
KRH03987	Soybean	nucleus	34.13	33.73
KRH38616	Soybean	plastid	34.92	26.91

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	EMBL:ACUP02007724	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
EnsemblPlantsGene:GLYMA_12G182400	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	UniProt:K7LVP1	EnsemblPlants:KRH26588	ProteinID:KRH26588	ProteinID:KRH26588.1	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31839	PANTHER:PTHR31839:SF8	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI000233C58D	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:34333849..34334607

Molecular Weight (calculated)

28073.1 Da

IEP (calculated)

8.464

GRAVY (calculated)

-0.402

Length

252 amino acids

Sequence
(BLAST)

001: MDVKMNKVES ESPYYNYSSS SPSSTSSQSQ LSLAFACNPN FSPDHSSLHA ETWKAGVLIS HKRKAGRKKF RETRHPVYRG VRQRNGNRWV CEVREPNKKS
101: RIWLGTYPTP EMAARAHDVA VLALKGTSAL FNFPDSVSLL PVAKSSSAAD VRVAASKVST IFCPSYSSVT LSSSSPSNSR VKAKPCLIDD FVKTENNVDE
201: AKSVFFDEEA FYNMPLLLDS MAEGLLITPP SMKRVFDWDQ VDCEIDLTLW TD

Best Arabidopsis Sequence Match ( AT4G25470.1 )
(BLAST)

001: MNSFSAFSEM FGSDYESPVS SGGDYSPKLA TSCPKKPAGR KKFRETRHPI YRGVRQRNSG KWVCELREPN KKTRIWLGTF QTAEMAARAH DVAAIALRGR
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY

Arabidopsis Description

DREB1CC-repeat binding factor 2 [Source:UniProtKB/TrEMBL;Acc:B2BIW9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.