CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25177	Soybean	nucleus	87.71	90.39
KRH22718	Soybean	nucleus	59.75	58.02
KRH26588	Soybean	nucleus	60.59	56.75
KRH26586	Soybean	nucleus	46.19	49.32
Solyc01g009440.1.1	Tomato	nucleus	42.8	48.1
PGSC0003DMT400088795	Potato	nucleus	42.37	47.39
KRH32669	Soybean	nucleus	36.44	46.49
KRH20038	Soybean	nucleus	37.71	45.64
KRH35383	Soybean	nucleus	35.17	40.49
KRG91437	Soybean	nucleus	35.17	40.1
KRH09144	Soybean	nucleus	36.02	36.8
KRH77483	Soybean	nucleus	34.75	36.28
KRH57258	Soybean	nucleus	37.29	34.65
KRH03987	Soybean	nucleus	36.02	33.33
KRH38616	Soybean	plastid	36.86	26.61

Protein Annotations

EntrezGene:100793751	MapMan:15.5.7.2	Gene3D:3.30.730.10	EMBL:ACUP02007026	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_11G188200	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:K7LQ79	EnsemblPlants:KRH30499	ProteinID:KRH30499	ProteinID:KRH30499.1
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31839	PANTHER:PTHR31839:SF8	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI000233CE6F	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:26003369..26004079

Molecular Weight (calculated)

25970.4 Da

IEP (calculated)

5.337

GRAVY (calculated)

-0.512

Length

236 amino acids

Sequence
(BLAST)

001: MEFEIINESP ADSTSLSSSS VSPCTPPNPN LLCDSPNPQP NTNTNPSHKR KAGRKKFRET RHPVYRGVRQ RNGNKWVCEI REPIKKSRVW VGTYPTPEMA
101: ARAHDVAVLA LSGTSAKFNF PDSVSLLPLA KSHSAVDIRE AAKAASIEAF IPNTAFSSSH NNSNFGENGN AEDTCLNIGM HDDESETMFF DEEAVYNMPG
201: LLDSMAEGLL ITPPSMKRAM DWDDIGCVID LTLWTN

Best Arabidopsis Sequence Match ( AT4G25490.1 )
(BLAST)

001: MNSFSAFSEM FGSDYEPQGG DYCPTLATSC PKKPAGRKKF RETRHPIYRG VRQRNSGKWV SEVREPNKKT RIWLGTFQTA EMAARAHDVA ALALRGRSAC
101: LNFADSAWRL RIPESTCAKD IQKAAAEAAL AFQDETCDTT TTNHGLDMEE TMVEAIYTPE QSEGAFYMDE ETMFGMPTLL DNMAEGMLLP PPSVQWNHNY
201: DGEGDGDVSL WSY

Arabidopsis Description

DREB1BDRE/CRT-binding factor 1 [Source:UniProtKB/TrEMBL;Acc:B6DTR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.