CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30499	Soybean	nucleus	90.39	87.71
KRH22718	Soybean	nucleus	61.57	58.02
KRH26588	Soybean	nucleus	61.14	55.56
KRH26586	Soybean	nucleus	48.47	50.23
Solyc01g009440.1.1	Tomato	nucleus	43.67	47.62
PGSC0003DMT400088795	Potato	nucleus	43.67	47.39
KRH32669	Soybean	nucleus	37.55	46.49
KRH20038	Soybean	nucleus	37.99	44.62
KRH35383	Soybean	nucleus	36.68	40.98
KRG91437	Soybean	nucleus	36.68	40.58
KRH77483	Soybean	nucleus	37.55	38.05
KRH09144	Soybean	nucleus	37.99	37.66
KRH57258	Soybean	nucleus	39.3	35.43
KRH03987	Soybean	nucleus	37.55	33.73
KRH38616	Soybean	plastid	38.86	27.22

Protein Annotations

EntrezGene:100810401	MapMan:15.5.7.2	Gene3D:3.30.730.10	EMBL:ACUP02007220	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_12G086200	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
UniProt:I1LRD3	InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:KRH25177	ProteinID:KRH25177	ProteinID:KRH25177.1
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31839	PANTHER:PTHR31839:SF8	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI000233C45C	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:6978359..6979048

Molecular Weight (calculated)

25372.9 Da

IEP (calculated)

6.354

GRAVY (calculated)

-0.489

Length

229 amino acids

Sequence
(BLAST)

001: MDFEIINESP DSTSLSSPSS LSPCTPPNSN PLSDSPNPQP SNIYTNPSHK RKAGRKKFRE TRHPVYRGVR QRNRNKWVCE IREPIKKSRI WVGTYPTPEM
101: AARAHDVAVL ALSGTSANFN FPDSVSLLPL AKSRSAVDIR EAAKATTTAE AFIPNTVFAC SHKNAEDTCL NIGMHDDGSE MFFDEEAVYN MPGLLDSMAE
201: GLLITPPSMK RAMDWDDIGC VIDLTLWTN

Best Arabidopsis Sequence Match ( AT4G25470.1 )
(BLAST)

001: MNSFSAFSEM FGSDYESPVS SGGDYSPKLA TSCPKKPAGR KKFRETRHPI YRGVRQRNSG KWVCELREPN KKTRIWLGTF QTAEMAARAH DVAAIALRGR
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY

Arabidopsis Description

DREB1CC-repeat binding factor 2 [Source:UniProtKB/TrEMBL;Acc:B2BIW9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.