Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400088795 | Potato | nucleus | 94.29 | 93.84 |
| Solyc03g026280.2.1 | Tomato | nucleus | 46.67 | 46.67 |
| Solyc03g026270.1.1 | Tomato | nucleus | 44.29 | 45.37 |
| KRH25177 | Soybean | nucleus | 47.62 | 43.67 |
| Solyc03g124110.1.1 | Tomato | nucleus | 45.71 | 43.64 |
| KRH22718 | Soybean | nucleus | 50.48 | 43.62 |
| KRH26588 | Soybean | nucleus | 51.9 | 43.25 |
| KRH30499 | Soybean | nucleus | 48.1 | 42.8 |
| KRH26586 | Soybean | nucleus | 44.29 | 42.08 |
| Solyc12g056430.1.1 | Tomato | nucleus | 34.76 | 35.96 |
| Solyc08g007820.1.1 | Tomato | nucleus | 40.95 | 35.25 |
| Solyc08g007830.1.1 | Tomato | nucleus | 37.62 | 34.5 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 | UniProt:K4ATE0 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31839 | PANTHER:PTHR31839:SF8 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:Solyc01g009440.1 | EnsemblPlants:Solyc01g009440.1.1 | UniParc:UPI0002763722 | SEG:seg | : |
Description
No Description!
Coordinates
chr1:-:3662862..3663494
Molecular Weight (calculated)
23846.1 Da
IEP (calculated)
5.194
GRAVY (calculated)
-0.698
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFEDEQTSS SSSSSDHDIK EKNIDHSSCS MNNNIQFKRR AGRKKFKETR HPLYRGVRKR NGEKWVCEIR EPNKKTRIWL GTFTTPELAA RAHDVAALAL
101: RGSNALLNFP GSAWSLPKAK SSSPQDIQIA VLQVNEELIV SSSPSEEPSC KPKDDEVNSL MEFMDEEAMF NMPIFIDSMA EGMLLTPPAM KRGFNWGDVE
201: EDVEFTLWKD
101: RGSNALLNFP GSAWSLPKAK SSSPQDIQIA VLQVNEELIV SSSPSEEPSC KPKDDEVNSL MEFMDEEAMF NMPIFIDSMA EGMLLTPPAM KRGFNWGDVE
201: EDVEFTLWKD
001: MNPFYSTFPD SFLSISDHRS PVSDSSECSP KLASSCPKKR AGRKKFRETR HPIYRGVRQR NSGKWVCEVR EPNKKSRIWL GTFPTVEMAA RAHDVAALAL
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE
Arabidopsis Description
DREB1DC-repeat binding factor 4 [Source:UniProtKB/TrEMBL;Acc:B2BJ26]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.