Factsheet for Solyc12g056430.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010876	Potato	nucleus	90.15	88.41
Solyc08g007830.1.1	Tomato	nucleus	58.13	51.53
Solyc08g007820.1.1	Tomato	nucleus	60.59	50.41
Solyc03g026270.1.1	Tomato	nucleus	47.78	47.32
GSMUA_Achr11P...	Banana	nucleus	45.32	44.23
Solyc03g026280.2.1	Tomato	nucleus	45.32	43.81
VIT_02s0025g04460.t01	Wine grape	nucleus	50.25	43.4
HORVU5Hr1G041600.1	Barley	nucleus	28.57	43.28
GSMUA_Achr8P11980_001	Banana	nucleus	44.34	42.65
Solyc03g124110.1.1	Tomato	nucleus	44.34	40.91
TraesCS6A01G256900.1	Wheat	nucleus	42.86	40.09
TraesCS6B01G268100.1	Wheat	nucleus	42.86	40.09
GSMUA_Achr7P05900_001	Banana	nucleus	40.39	39.81
GSMUA_Achr6P13340_001	Banana	nucleus	37.44	39.79
HORVU0Hr1G016540.1	Barley	nucleus	42.36	39.63
TraesCS6D01G238200.1	Wheat	nucleus	42.36	39.63
Os02t0677300-02	Rice	nucleus	43.35	39.29
Os04t0572400-00	Rice	nucleus	41.87	38.81
Zm00001d002618_P001	Maize	nucleus	41.87	38.29
TraesCS2A01G399500.1	Wheat	nucleus, plastid	40.89	38.07
TraesCS2D01G397000.1	Wheat	nucleus	40.39	37.79
EES11288	Sorghum	nucleus	41.38	37.0
Zm00001d017592_P001	Maize	nucleus	41.87	36.8
GSMUA_Achr2P20280_001	Banana	nucleus	35.96	36.32
Os01t0968800-00	Rice	nucleus	38.92	36.07
TraesCS2B01G002700.1	Wheat	nucleus, plastid	33.5	35.79
HORVU6Hr1G065580.4	Barley	nucleus, plastid	38.92	35.11
TraesCS2D01G015200.1	Wheat	nucleus	33.0	35.08
Solyc01g009440.1.1	Tomato	nucleus	35.96	34.76
Os06t0127100-01	Rice	nucleus	36.45	34.58
TraesCS5A01G311000.1	Wheat	nucleus	37.44	34.55
TraesCS5D01G318000.1	Wheat	nucleus	37.44	34.55
TraesCS5A01G311700.1	Wheat	nucleus	39.41	34.33
TraesCS5D01G318600.1	Wheat	nucleus	39.41	34.33
TraesCS2B01G417500.1	Wheat	nucleus	35.96	34.27
GSMUA_Achr8P16070_001	Banana	nucleus, plastid	32.51	34.2
TraesCS5B01G311700.1	Wheat	nucleus	36.95	34.09
GSMUA_Achr10P...	Banana	nucleus	37.93	34.07
TraesCS5B01G311500.1	Wheat	nucleus	35.47	33.96
TraesCS5D01G317700.1	Wheat	nucleus	35.47	33.96
TraesCS5A01G311300.1	Wheat	nucleus	34.98	33.49
HORVU5Hr1G080340.1	Barley	nucleus, plastid	38.42	33.48
TraesCS7D01G052400.1	Wheat	nucleus	35.96	33.33
TraesCS5B01G312000.1	Wheat	nucleus	34.98	33.18
TraesCS5D01G318300.1	Wheat	nucleus	34.98	33.18
TraesCS5B01G311600.1	Wheat	nucleus	33.0	33.17
TraesCS5D01G317200.1	Wheat	nucleus	34.48	32.86
TraesCS7A01G057800.1	Wheat	nucleus, plastid	33.99	32.86
HORVU5Hr1G080350.1	Barley	nucleus	34.48	32.71
TraesCS5D01G317800.1	Wheat	nucleus	32.51	32.67
TraesCS5D01G318400.1	Wheat	nucleus	38.42	32.64
TraesCS5B01G312300.1	Wheat	nucleus	37.44	32.62
TraesCS5A01G310400.1	Wheat	nucleus	36.95	32.61
TraesCS5B01G311200.1	Wheat	nucleus	36.45	32.6
HORVU5Hr1G080220.2	Barley	nucleus	35.96	32.59
HORVU5Hr1G080310.1	Barley	nucleus	35.47	32.58
TraesCS5B01G310900.1	Wheat	nucleus	28.08	32.57
TraesCS5A01G310200.1	Wheat	nucleus	33.99	32.55
TraesCS5B01G311900.1	Wheat	plastid	37.44	32.48
TraesCS5D01G318100.1	Wheat	nucleus, plastid	37.44	32.48
TraesCS5D01G318200.1	Wheat	nucleus, plastid	36.95	32.47
TraesCS4A01G433200.1	Wheat	nucleus	36.45	32.46
TraesCS5A01G310600.1	Wheat	nucleus	35.96	32.44
TraesCS7A01G057700.1	Wheat	nucleus	35.96	32.44
TraesCS5A01G310700.1	Wheat	nucleus	35.47	32.43
TraesCS5B01G311400.1	Wheat	nucleus	35.47	32.43
TraesCS4A01G433300.1	Wheat	nucleus	34.48	32.41
Zm00001d036003_P001	Maize	nucleus	36.95	32.33
EES02136	Sorghum	nucleus	38.42	32.23
TraesCS5D01G317300.1	Wheat	nucleus	36.45	32.17
Zm00001d006170_P001	Maize	nucleus	36.45	32.17
TraesCS6A01G186400.1	Wheat	plastid	37.44	32.07
TraesCS1B01G335100.1	Wheat	nucleus	34.98	31.98
TraesCS6B01G218000.1	Wheat	plastid	38.42	31.97
TraesCS5A01G310800.1	Wheat	nucleus	33.99	31.94
TraesCS5A01G311500.1	Wheat	nucleus, plastid	37.44	31.93
TraesCS5D01G317500.1	Wheat	nucleus	35.47	31.86
HORVU5Hr1G080440.2	Barley	nucleus, plastid	38.42	31.84
TraesCS6D01G365800.1	Wheat	nucleus	38.42	31.84
Zm00001d041981_P001	Maize	nucleus	38.42	31.84
TraesCS5B01G312100.1	Wheat	nucleus, plastid	37.44	31.8
TraesCS7D01G052600.1	Wheat	nucleus	34.98	31.7
TraesCS5D01G318500.1	Wheat	nucleus	37.93	31.69
TraesCS5A01G311100.1	Wheat	nucleus	36.45	31.62
Zm00001d021208_P001	Maize	plastid	35.96	31.6
TraesCS5A01G311800.1	Wheat	plastid	37.93	31.56
HORVU5Hr1G080300.1	Barley	nucleus	34.98	31.56
HORVU5Hr1G080430.1	Barley	nucleus	37.44	31.54
HORVU5Hr1G080400.1	Barley	nucleus, plastid	16.26	31.43
TraesCS5B01G312200.1	Wheat	nucleus	37.93	31.43
TraesCS6A01G381200.1	Wheat	plastid	37.93	31.43
Zm00001d052732_P001	Maize	plastid	34.48	31.39
Zm00001d021205_P001	Maize	plastid	37.93	31.3
TraesCS5B01G312700.1	Wheat	nucleus	37.44	31.28
HORVU6Hr1G089320.1	Barley	nucleus	34.48	31.25
TraesCS5B01G312800.1	Wheat	plastid	36.95	31.25
TraesCS5D01G318800.1	Wheat	nucleus, plastid	36.95	31.25
TraesCS6D01G366100.1	Wheat	nucleus	37.44	31.15
TraesCS5A01G311600.1	Wheat	nucleus	37.44	31.02
TraesCS6B01G420100.1	Wheat	nucleus	37.44	31.02
TraesCS5A01G311900.1	Wheat	nucleus	36.45	30.96
TraesCS6D01G173500.1	Wheat	plastid	36.95	30.86
TraesCS7D01G052500.1	Wheat	nucleus	34.48	30.84
HORVU7Hr1G010510.2	Barley	nucleus	31.03	30.73
EER99213	Sorghum	nucleus	35.47	30.64
Os09t0522100-00	Rice	nucleus	36.95	30.49
TraesCS6A01G381000.1	Wheat	nucleus	36.95	30.49
Zm00001d031728_P001	Maize	nucleus, plastid	33.99	30.4
TraesCS5B01G312900.1	Wheat	nucleus	36.45	30.33
Os09t0522200-01	Rice	nucleus	35.47	30.25
EER87753	Sorghum	nucleus	36.95	30.12
EER99212	Sorghum	nucleus, plastid	35.47	30.0
TraesCS5D01G317900.1	Wheat	nucleus	35.47	30.0
Zm00001d021207_P001	Maize	nucleus	34.98	29.83
EER99214	Sorghum	plastid	35.47	29.51
TraesCS5A01G310000.1	Wheat	plastid	35.47	29.15
TraesCS5B01G313000.1	Wheat	nucleus	33.5	28.81
TraesCS5D01G318900.1	Wheat	nucleus	33.5	28.57
TraesCS5A01G312000.1	Wheat	plastid	33.99	28.51
Zm00001d006169_P001	Maize	plastid	36.45	28.03
EES14131	Sorghum	nucleus, plastid	33.0	27.92
EER99211	Sorghum	plastid	36.45	26.91
HORVU5Hr1G080380.1	Barley	nucleus, plastid	35.47	26.87
TraesCS5A01G310100.1	Wheat	nucleus	35.47	26.77
TraesCS5B01G310800.1	Wheat	nucleus	35.47	26.77
TraesCS5D01G317100.1	Wheat	nucleus, plastid	35.47	26.77
HORVU5Hr1G080420.1	Barley	nucleus, plastid	37.44	26.76
TraesCS5D01G317600.1	Wheat	nucleus, plastid	29.06	26.46
GSMUA_Achr4P19660_001	Banana	mitochondrion, nucleus	41.38	26.42
TraesCS5A01G310900.1	Wheat	mitochondrion	22.66	26.14
OQU85641	Sorghum	nucleus	42.36	25.83
TraesCS5A01G310500.1	Wheat	nucleus, plastid	34.98	25.82
TraesCS5D01G317400.1	Wheat	nucleus	34.98	25.82
HORVU5Hr1G080230.1	Barley	nucleus	36.45	25.43
TraesCS5B01G311300.1	Wheat	nucleus	33.5	23.45
HORVU5Hr1G080450.1	Barley	nucleus, plastid	34.48	23.26
OQU89795	Sorghum	mitochondrion, nucleus	35.96	21.79
Os06t0165600-01	Rice	nucleus, plastid	26.6	21.34

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:K4DFX4
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31839	PANTHER:PTHR31839:SF0	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:Solyc12g056430.1	EnsemblPlants:Solyc12g056430.1.1	UniParc:UPI0002769EB8	SEG:seg	:

Description

No Description!

Coordinates

chr12:+:62355162..62355773

Molecular Weight (calculated)

22988.9 Da

IEP (calculated)

5.744

GRAVY (calculated)

-0.636

Length

203 amino acids

Sequence
(BLAST)

001: MNNSSNSCSS IPSDEGSIIL ESSNKSKKRA AGRKKFKETR HPVFRGVRKR DNDKWVCEIR EPTKQKRIWL GTYLTAEMAA RAHDVAALAL KGELAKLNFA
101: DSAWRLQVPV SKDPKELRQA AARAVEAFEN VREVAPQENN IVVDCNMMVD ENNNSNSCGI EEWVANMEEE SLFSPNPCLF GSHFNWDDHV ESDVEVSLWN
201: YTI

Best Arabidopsis Sequence Match ( AT1G63030.1 )
(BLAST)

001: MENDDITVAE MKPKKRAGRR IFKETRHPIY RGVRRRDGDK WVCEVREPIH QRRVWLGTYP TADMAARAHD VAVLALRGRS ACLNFSDSAW RLPVPASTDP
101: DTIRRTAAEA AEMFRPPEFS TGITVLPSAS EFDTSDEGVA GMMMRLAEEP LMSPPRSYID MNTSVYVDEE MCYEDLSLWS Y

Arabidopsis Description

DREB1EDehydration-responsive element-binding protein 1E [Source:UniProtKB/Swiss-Prot;Acc:Q9SGJ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.