Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25490.1 | OQU91781 | AT3G54610.1 | 16603259 |
| AT4G25490.1 | EER90868 | AT4G16420.1 | 16603259 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d017592_P001 | Maize | nucleus | 63.36 | 91.34 |
| TraesCS6B01G268100.1 | Wheat | nucleus | 49.85 | 76.5 |
| TraesCS6A01G256900.1 | Wheat | nucleus | 49.85 | 76.5 |
| TraesCS6D01G238200.1 | Wheat | nucleus | 49.25 | 75.58 |
| Os02t0677300-02 | Rice | nucleus | 50.45 | 75.0 |
| HORVU0Hr1G016540.1 | Barley | nucleus | 48.65 | 74.65 |
| HORVU6Hr1G065580.4 | Barley | nucleus, plastid | 45.05 | 66.67 |
| EES11288 | Sorghum | nucleus | 43.54 | 63.88 |
| GSMUA_Achr7P05900_001 | Banana | nucleus | 32.43 | 52.43 |
| AT1G63030.2 | Thale cress | nucleus | 25.23 | 46.41 |
| KRG91437 | Soybean | nucleus | 28.83 | 46.38 |
| KRH35383 | Soybean | nucleus | 28.53 | 46.34 |
| Bra028290.1-P | Field mustard | nucleus | 30.33 | 45.91 |
| CDY00510 | Canola | nucleus | 30.33 | 45.91 |
| AT4G25480.1 | Thale cress | nucleus | 29.43 | 45.37 |
| Solyc03g026270.1.1 | Tomato | nucleus | 27.93 | 45.37 |
| AT4G25490.1 | Thale cress | nucleus | 28.83 | 45.07 |
| CDY31925 | Canola | nucleus | 29.73 | 45.0 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 29.43 | 44.95 |
| CDY70584 | Canola | nucleus | 28.83 | 44.86 |
| Bra019162.1-P | Field mustard | nucleus | 28.83 | 44.86 |
| CDX92710 | Canola | nucleus | 28.83 | 44.65 |
| CDY65499 | Canola | nucleus | 28.83 | 44.44 |
| AT4G25470.1 | Thale cress | nucleus | 28.83 | 44.44 |
| Bra022770.1-P | Field mustard | nucleus | 28.53 | 44.39 |
| CDY52356 | Canola | nucleus | 28.83 | 44.24 |
| PGSC0003DMT400037122 | Potato | nucleus | 28.83 | 44.24 |
| CDY66018 | Canola | nucleus | 28.23 | 43.93 |
| CDX84868 | Canola | nucleus | 28.23 | 43.93 |
| CDY52360 | Canola | nucleus | 29.13 | 43.89 |
| AT5G51990.1 | Thale cress | nucleus | 29.43 | 43.75 |
| CDY71145 | Canola | nucleus | 26.43 | 43.56 |
| Bra016763.1-P | Field mustard | nucleus | 26.43 | 43.56 |
| CDY57075 | Canola | nucleus | 27.03 | 43.48 |
| PGSC0003DMT400010876 | Potato | nucleus | 27.03 | 43.48 |
| CDY16016 | Canola | nucleus | 26.13 | 43.28 |
| CDY49205 | Canola | nucleus | 24.02 | 43.24 |
| Bra027612.1-P | Field mustard | nucleus | 24.02 | 43.24 |
| CDY31270 | Canola | nucleus | 26.13 | 43.07 |
| Bra026963.1-P | Field mustard | nucleus | 26.43 | 42.93 |
| CDY26574 | Canola | nucleus | 26.43 | 42.93 |
| EER87753 | Sorghum | nucleus | 31.83 | 42.57 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 30.03 | 42.55 |
| Solyc12g056430.1.1 | Tomato | nucleus | 25.83 | 42.36 |
| Bra019777.1-P | Field mustard | nucleus | 26.13 | 42.23 |
| Solyc03g026280.2.1 | Tomato | nucleus | 26.13 | 41.43 |
| AT1G12610.1 | Thale cress | nucleus | 25.83 | 41.15 |
| CDY66013 | Canola | nucleus | 23.12 | 40.31 |
| KRH09144 | Soybean | nucleus | 27.93 | 40.26 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 14.71 | 40.16 |
| Solyc03g124110.1.1 | Tomato | nucleus | 26.43 | 40.0 |
| GSMUA_Achr4P19660_001 | Banana | mitochondrion, nucleus | 38.14 | 39.94 |
| KRH77483 | Soybean | nucleus | 27.03 | 39.82 |
| Solyc08g007830.1.1 | Tomato | nucleus | 27.33 | 39.74 |
| CDY52358 | Canola | nucleus | 22.52 | 39.68 |
| PGSC0003DMT400032621 | Potato | nucleus | 28.83 | 39.34 |
| Solyc08g007820.1.1 | Tomato | nucleus | 28.83 | 39.34 |
| EES14131 | Sorghum | nucleus, plastid | 28.23 | 39.17 |
| PGSC0003DMT400032622 | Potato | nucleus | 27.93 | 39.08 |
| EES02136 | Sorghum | nucleus | 27.93 | 38.43 |
| PGSC0003DMT400037120 | Potato | nucleus | 26.73 | 37.71 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 14.71 | 37.69 |
| EER99212 | Sorghum | nucleus, plastid | 26.73 | 37.08 |
| EER99213 | Sorghum | nucleus | 26.13 | 37.02 |
| PGSC0003DMT400032623 | Potato | nucleus | 27.63 | 36.95 |
| KRH03987 | Soybean | nucleus | 27.63 | 36.08 |
| KRH57258 | Soybean | nucleus | 27.33 | 35.83 |
| PGSC0003DMT400037121 | Potato | nucleus | 27.63 | 35.66 |
| Bra010461.1-P | Field mustard | nucleus | 27.63 | 35.66 |
| Bra010460.1-P | Field mustard | nucleus | 29.13 | 35.27 |
| EER99214 | Sorghum | plastid | 25.83 | 35.25 |
| Bra010463.1-P | Field mustard | nucleus | 23.42 | 34.82 |
| KRH38616 | Soybean | plastid | 33.63 | 34.25 |
| EER99211 | Sorghum | plastid | 27.63 | 33.45 |
| PGSC0003DMT400006896 | Potato | cytosol | 12.91 | 32.09 |
| OQU89795 | Sorghum | mitochondrion, nucleus | 30.33 | 30.15 |
| PGSC0003DMT400090651 | Potato | nucleus | 24.92 | 25.23 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | UniProt:A0A1Z5RPX1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| EnsemblPlants:OQU85641 | ProteinID:OQU85641 | ProteinID:OQU85641.1 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31839 | PANTHER:PTHR31839:SF20 | SMART:SM00380 | EnsemblPlantsGene:SORBI_3004G283201 | SUPFAM:SSF54171 | UniParc:UPI0003C65703 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:-:62486634..62488037
Molecular Weight (calculated)
36066.4 Da
IEP (calculated)
9.588
GRAVY (calculated)
-0.643
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MPARPHPRPP APRAPAGSDP LRARRARPLS PSPEHPLPDR PIKSHYLAGA SRAAPRWNSA RGHVALHALT YITRHLSLQI SNQMLRHTFL LPPARHGHHH
101: TRPSPMDAAS FSDYSSGTPS PVGGVSGGVD GDDGGSSSSY MTVSSAPPKR RAGRTKFKET RHPVYKGVRR RNPGRWVCEV REPHGKQRIW LGTFETAEMA
201: ARAHDVAALA LRGRAACLNF ADSPRLLRVP PMGSGHDEIR RAAAVAADQF RPAPDRQGNV ATAEEAADTT PLDATTQSVV DDPYCIIDDR LDFGMQGYLD
301: MAQGMLIDPP PMAGSSTSGG DDDDDGEVKL WSY
101: TRPSPMDAAS FSDYSSGTPS PVGGVSGGVD GDDGGSSSSY MTVSSAPPKR RAGRTKFKET RHPVYKGVRR RNPGRWVCEV REPHGKQRIW LGTFETAEMA
201: ARAHDVAALA LRGRAACLNF ADSPRLLRVP PMGSGHDEIR RAAAVAADQF RPAPDRQGNV ATAEEAADTT PLDATTQSVV DDPYCIIDDR LDFGMQGYLD
301: MAQGMLIDPP PMAGSSTSGG DDDDDGEVKL WSY
001: MNPFYSTFPD SFLSISDHRS PVSDSSECSP KLASSCPKKR AGRKKFRETR HPIYRGVRQR NSGKWVCEVR EPNKKSRIWL GTFPTVEMAA RAHDVAALAL
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE
Arabidopsis Description
DREB1DC-repeat binding factor 4 [Source:UniProtKB/TrEMBL;Acc:B2BJ26]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.