Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- nucleus 3
- cytosol 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr6P00130_001 | |
| GSMUA_Achr8P04400_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25490.1 | GSMUA_Achr8P04400_001 | AT3G54610.1 | 16603259 |
| AT4G25490.1 | GSMUA_Achr6P00130_001 | AT4G16420.1 | 16603259 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P05900_001 | Banana | nucleus | 52.2 | 80.58 |
| GSMUA_Achr8P11980_001 | Banana | nucleus | 35.53 | 53.55 |
| GSMUA_Achr11P... | Banana | nucleus | 34.91 | 53.37 |
| TraesCS6A01G256900.1 | Wheat | nucleus | 35.85 | 52.53 |
| HORVU0Hr1G016540.1 | Barley | nucleus | 35.85 | 52.53 |
| TraesCS6B01G268100.1 | Wheat | nucleus | 35.53 | 52.07 |
| TraesCS6D01G238200.1 | Wheat | nucleus | 35.22 | 51.61 |
| Os04t0572400-00 | Rice | nucleus | 35.22 | 51.14 |
| Os02t0677300-02 | Rice | nucleus | 35.85 | 50.89 |
| KRH35383 | Soybean | nucleus | 32.39 | 50.24 |
| KRG91437 | Soybean | nucleus | 32.7 | 50.24 |
| GSMUA_Achr3P18160_001 | Banana | nucleus | 10.69 | 50.0 |
| Zm00001d017592_P001 | Maize | nucleus | 35.85 | 49.35 |
| Solyc03g026270.1.1 | Tomato | nucleus | 31.76 | 49.27 |
| TraesCS2A01G399500.1 | Wheat | nucleus, plastid | 33.33 | 48.62 |
| CDY00510 | Canola | nucleus | 33.33 | 48.18 |
| CDY31925 | Canola | nucleus | 33.33 | 48.18 |
| TraesCS2D01G397000.1 | Wheat | nucleus | 32.7 | 47.93 |
| Bra028290.1-P | Field mustard | nucleus | 33.02 | 47.73 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 32.39 | 47.25 |
| EES11288 | Sorghum | nucleus | 33.65 | 47.14 |
| PGSC0003DMT400037122 | Potato | nucleus | 32.08 | 47.0 |
| Zm00001d002618_P001 | Maize | nucleus | 32.7 | 46.85 |
| AT5G51990.1 | Thale cress | nucleus | 32.7 | 46.43 |
| CDY66018 | Canola | nucleus | 31.13 | 46.26 |
| GSMUA_Achr6P13340_001 | Banana | nucleus | 27.67 | 46.07 |
| AT1G63030.2 | Thale cress | nucleus | 26.1 | 45.86 |
| CDY70584 | Canola | nucleus | 30.82 | 45.79 |
| CDX84868 | Canola | nucleus | 30.82 | 45.79 |
| Bra019162.1-P | Field mustard | nucleus | 30.82 | 45.79 |
| Bra022770.1-P | Field mustard | nucleus | 30.82 | 45.79 |
| HORVU6Hr1G065580.4 | Barley | nucleus, plastid | 32.08 | 45.33 |
| AT4G25480.1 | Thale cress | nucleus | 30.5 | 44.91 |
| CDX92710 | Canola | nucleus | 30.19 | 44.65 |
| AT4G25490.1 | Thale cress | nucleus | 29.87 | 44.6 |
| AT4G25470.1 | Thale cress | nucleus | 30.19 | 44.44 |
| Solyc03g026280.2.1 | Tomato | nucleus | 29.25 | 44.29 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 16.98 | 44.26 |
| CDY52356 | Canola | nucleus | 30.19 | 44.24 |
| Solyc03g124110.1.1 | Tomato | nucleus | 30.5 | 44.09 |
| KRH09144 | Soybean | nucleus | 31.45 | 43.29 |
| Bra016763.1-P | Field mustard | nucleus | 27.36 | 43.07 |
| CDY71145 | Canola | nucleus | 27.36 | 43.07 |
| CDY65499 | Canola | nucleus | 29.25 | 43.06 |
| CDY52360 | Canola | nucleus | 29.87 | 42.99 |
| TraesCS2B01G417500.1 | Wheat | nucleus | 28.62 | 42.72 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 31.45 | 42.55 |
| CDY57075 | Canola | nucleus | 27.67 | 42.51 |
| PGSC0003DMT400010876 | Potato | nucleus | 27.67 | 42.51 |
| CDY16016 | Canola | nucleus | 26.73 | 42.29 |
| Bra027612.1-P | Field mustard | nucleus | 24.53 | 42.16 |
| CDY49205 | Canola | nucleus | 24.53 | 42.16 |
| CDY31270 | Canola | nucleus | 26.73 | 42.08 |
| Bra019777.1-P | Field mustard | nucleus | 27.04 | 41.75 |
| PGSC0003DMT400037120 | Potato | nucleus | 30.82 | 41.53 |
| CDY26574 | Canola | nucleus | 26.73 | 41.46 |
| Bra026963.1-P | Field mustard | nucleus | 26.73 | 41.46 |
| Solyc12g056430.1.1 | Tomato | nucleus | 26.42 | 41.38 |
| GSMUA_Achr10P... | Banana | nucleus | 28.93 | 40.71 |
| AT1G12610.1 | Thale cress | nucleus | 26.42 | 40.19 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 16.35 | 40.0 |
| PGSC0003DMT400037121 | Potato | nucleus | 32.39 | 39.92 |
| KRH77483 | Soybean | nucleus | 28.3 | 39.82 |
| GSMUA_Achr8P16070_001 | Banana | nucleus, plastid | 23.9 | 39.38 |
| CDY52358 | Canola | nucleus | 23.27 | 39.15 |
| GSMUA_Achr2P20280_001 | Banana | nucleus | 24.53 | 38.81 |
| CDY66013 | Canola | nucleus | 22.96 | 38.22 |
| OQU85641 | Sorghum | nucleus | 39.94 | 38.14 |
| PGSC0003DMT400032622 | Potato | nucleus | 27.67 | 36.97 |
| KRH03987 | Soybean | nucleus | 29.25 | 36.47 |
| KRH57258 | Soybean | nucleus | 28.93 | 36.22 |
| KRH38616 | Soybean | plastid | 36.48 | 35.47 |
| Bra010461.1-P | Field mustard | nucleus | 28.62 | 35.27 |
| Bra010460.1-P | Field mustard | nucleus | 30.19 | 34.91 |
| Solyc08g007820.1.1 | Tomato | nucleus | 26.73 | 34.84 |
| Solyc08g007830.1.1 | Tomato | nucleus | 24.84 | 34.5 |
| PGSC0003DMT400032621 | Potato | nucleus | 26.42 | 34.43 |
| Bra010463.1-P | Field mustard | nucleus | 23.9 | 33.93 |
| PGSC0003DMT400032623 | Potato | nucleus | 25.79 | 32.93 |
| PGSC0003DMT400090651 | Potato | nucleus | 28.3 | 27.36 |
| PGSC0003DMT400006896 | Potato | cytosol | 11.32 | 26.87 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr4G19660_001 | EnsemblPlants:GSMUA_Achr4P19660_001 | EnsemblPlants:GSMUA_Achr4T19660_001 |
| InterPro:IPR001471 | InterPro:IPR036955 | UniProt:M0SQC9 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31839 | PANTHER:PTHR31839:SF8 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0002953BAA | SEG:seg |
Description
Dehydration-responsive element-binding protein 1D [Source:GMGC_GENE;Acc:GSMUA_Achr4G19660_001]
Coordinates
chr4:-:20544238..20545821
Molecular Weight (calculated)
33752.7 Da
IEP (calculated)
9.246
GRAVY (calculated)
-0.440
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSRVVRNWQ PSPTVPLESA CLARATKLTA NRQKCVKISS IPRKSKRATV PKKSVLDTCI RGINLGSAAS FLDPAAEALP LTTPSPVPAA PGSDDSPHRP
101: YGAASASGSR ETWSYPTVSQ APPKRPAGRT KFRETRHPVY RGVRQRGAAG RWVCEVREPN KKSRIWVGTF PTADMAARAH DVAAMMLRGR SACLNFADSA
201: WRLRVPPSFS GPRDIARAAA EAAEAFRPPS DSNGDAKEGK TSAAASSAAA TTSTMSPEED TGGGDAIDAM AYDDMDLGFG YYSGMAEGLL LVEPPPNGGC
301: NWDDVDAGAD VPLWSHSI
101: YGAASASGSR ETWSYPTVSQ APPKRPAGRT KFRETRHPVY RGVRQRGAAG RWVCEVREPN KKSRIWVGTF PTADMAARAH DVAAMMLRGR SACLNFADSA
201: WRLRVPPSFS GPRDIARAAA EAAEAFRPPS DSNGDAKEGK TSAAASSAAA TTSTMSPEED TGGGDAIDAM AYDDMDLGFG YYSGMAEGLL LVEPPPNGGC
301: NWDDVDAGAD VPLWSHSI
001: MNPFYSTFPD SFLSISDHRS PVSDSSECSP KLASSCPKKR AGRKKFRETR HPIYRGVRQR NSGKWVCEVR EPNKKSRIWL GTFPTVEMAA RAHDVAALAL
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE
Arabidopsis Description
DREB1DC-repeat binding factor 4 [Source:UniProtKB/TrEMBL;Acc:B2BJ26]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.