Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d013265_P003 | |
| Zm00001d014175_P004 | |
| Zm00001d034033_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25490.1 | Zm00001d014175_P004 | AT3G54610.1 | 16603259 |
| AT4G25490.1 | Zm00001d013265_P003 | AT4G16420.1 | 16603259 |
| AT4G25490.1 | Zm00001d034033_P002 | AT4G16420.1 | 16603259 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G268100.1 | Wheat | nucleus | 73.59 | 78.34 |
| TraesCS6A01G256900.1 | Wheat | nucleus | 73.59 | 78.34 |
| TraesCS6D01G238200.1 | Wheat | nucleus | 72.73 | 77.42 |
| HORVU0Hr1G016540.1 | Barley | nucleus | 71.86 | 76.5 |
| Os02t0677300-02 | Rice | nucleus | 72.73 | 75.0 |
| Zm00001d002618_P001 | Maize | nucleus | 65.8 | 68.47 |
| HORVU6Hr1G065580.4 | Barley | nucleus, plastid | 66.67 | 68.44 |
| OQU85641 | Sorghum | nucleus | 91.34 | 63.36 |
| GSMUA_Achr7P05900_001 | Banana | nucleus | 47.62 | 53.4 |
| KRG91437 | Soybean | nucleus | 42.42 | 47.34 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 44.16 | 46.79 |
| AT1G63030.2 | Thale cress | nucleus | 36.36 | 46.41 |
| KRH35383 | Soybean | nucleus | 41.13 | 46.34 |
| Zm00001d036003_P001 | Maize | nucleus | 46.32 | 46.12 |
| CDX92710 | Canola | nucleus | 42.86 | 46.05 |
| AT4G25490.1 | Thale cress | nucleus | 42.42 | 46.01 |
| Bra028290.1-P | Field mustard | nucleus | 43.72 | 45.91 |
| CDY00510 | Canola | nucleus | 43.72 | 45.91 |
| Solyc03g026270.1.1 | Tomato | nucleus | 40.69 | 45.85 |
| AT4G25480.1 | Thale cress | nucleus | 42.86 | 45.83 |
| AT4G25470.1 | Thale cress | nucleus | 42.42 | 45.37 |
| Bra019162.1-P | Field mustard | nucleus | 41.99 | 45.33 |
| CDY70584 | Canola | nucleus | 41.99 | 45.33 |
| PGSC0003DMT400037122 | Potato | nucleus | 42.42 | 45.16 |
| CDY31925 | Canola | nucleus | 42.86 | 45.0 |
| CDY52356 | Canola | nucleus | 41.99 | 44.7 |
| CDY65499 | Canola | nucleus | 41.56 | 44.44 |
| CDX84868 | Canola | nucleus | 41.13 | 44.39 |
| Bra022770.1-P | Field mustard | nucleus | 41.13 | 44.39 |
| CDY52360 | Canola | nucleus | 42.42 | 44.34 |
| CDY71145 | Canola | nucleus | 38.53 | 44.06 |
| Bra016763.1-P | Field mustard | nucleus | 38.53 | 44.06 |
| CDY57075 | Canola | nucleus | 39.39 | 43.96 |
| CDY66018 | Canola | nucleus | 40.69 | 43.93 |
| CDY16016 | Canola | nucleus | 38.1 | 43.78 |
| PGSC0003DMT400010876 | Potato | nucleus | 38.96 | 43.48 |
| CDY26574 | Canola | nucleus | 38.53 | 43.41 |
| Bra026963.1-P | Field mustard | nucleus | 38.53 | 43.41 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 44.16 | 43.4 |
| AT5G51990.1 | Thale cress | nucleus | 41.99 | 43.3 |
| Bra027612.1-P | Field mustard | nucleus | 34.63 | 43.24 |
| CDY49205 | Canola | nucleus | 34.63 | 43.24 |
| CDY31270 | Canola | nucleus | 37.66 | 43.07 |
| Bra019777.1-P | Field mustard | nucleus | 38.1 | 42.72 |
| Solyc03g026280.2.1 | Tomato | nucleus | 38.53 | 42.38 |
| Solyc12g056430.1.1 | Tomato | nucleus | 36.8 | 41.87 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 22.08 | 41.8 |
| Zm00001d031728_P001 | Maize | nucleus, plastid | 40.69 | 41.41 |
| Solyc03g124110.1.1 | Tomato | nucleus | 38.96 | 40.91 |
| CDY66013 | Canola | nucleus | 33.77 | 40.84 |
| AT1G12610.1 | Thale cress | nucleus | 36.8 | 40.67 |
| Zm00001d041981_P001 | Maize | nucleus | 42.86 | 40.41 |
| Zm00001d052732_P001 | Maize | plastid | 38.96 | 40.36 |
| CDY52358 | Canola | nucleus | 32.9 | 40.21 |
| KRH09144 | Soybean | nucleus | 39.83 | 39.83 |
| KRH77483 | Soybean | nucleus | 38.96 | 39.82 |
| Solyc08g007830.1.1 | Tomato | nucleus | 39.39 | 39.74 |
| PGSC0003DMT400037120 | Potato | nucleus | 40.26 | 39.41 |
| PGSC0003DMT400032621 | Potato | nucleus | 40.69 | 38.52 |
| Solyc08g007820.1.1 | Tomato | nucleus | 40.69 | 38.52 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 21.64 | 38.46 |
| PGSC0003DMT400032622 | Potato | nucleus | 39.39 | 38.24 |
| Zm00001d021205_P001 | Maize | plastid | 39.83 | 37.4 |
| PGSC0003DMT400032623 | Potato | nucleus | 40.26 | 37.35 |
| Zm00001d021208_P001 | Maize | plastid | 37.23 | 37.23 |
| PGSC0003DMT400037121 | Potato | nucleus | 41.13 | 36.82 |
| Bra010461.1-P | Field mustard | nucleus | 41.13 | 36.82 |
| Zm00001d006170_P001 | Maize | nucleus | 36.36 | 36.52 |
| Zm00001d021207_P001 | Maize | nucleus | 37.23 | 36.13 |
| KRH03987 | Soybean | nucleus | 39.83 | 36.08 |
| GSMUA_Achr4P19660_001 | Banana | mitochondrion, nucleus | 49.35 | 35.85 |
| KRH57258 | Soybean | nucleus | 39.39 | 35.83 |
| Bra010460.1-P | Field mustard | nucleus | 42.42 | 35.64 |
| Bra010463.1-P | Field mustard | nucleus | 34.2 | 35.27 |
| Zm00001d006169_P001 | Maize | plastid | 38.96 | 34.09 |
| PGSC0003DMT400006896 | Potato | cytosol | 19.05 | 32.84 |
| KRH38616 | Soybean | plastid | 41.13 | 29.05 |
| PGSC0003DMT400090651 | Potato | nucleus | 35.93 | 25.23 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | UniProt:A0A1D6HFV9 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | ProteinID:AQK73516.1 |
| InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 |
| InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31839 | PANTHER:PTHR31839:SF20 |
| SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0001B60699 | EnsemblPlantsGene:Zm00001d017592 | EnsemblPlants:Zm00001d017592_P001 | EnsemblPlants:Zm00001d017592_T001 |
| SEG:seg | : | : | : | : | : |
Description
AP2-EREBP-transcription factor 16Dehydration-responsive element-binding protein 1A
Coordinates
chr5:+:201022603..201023298
Molecular Weight (calculated)
24604.5 Da
IEP (calculated)
4.650
GRAVY (calculated)
-0.599
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAAGSFSDY SSGTPSPVAG GGGGDDFGSS SYMTVSSAPP KRRAGRTKFK ETRHPVYKGV RRRNPGRWVC EVREPHGKQR IWLGTFETAE MAARAHDVAA
101: LALRGRAACL NFADSPRLLR VPPTGSGHDE IRRAAAVAAD QFRPAPDQGN VAAEEEAADT PPPDALPSVT MQSVDDDPYC IIDDRLDFGM QGYLDMAQGM
201: LIDPPPMAGS STSGGGGDDD DDDGEVKLWS Y
101: LALRGRAACL NFADSPRLLR VPPTGSGHDE IRRAAAVAAD QFRPAPDQGN VAAEEEAADT PPPDALPSVT MQSVDDDPYC IIDDRLDFGM QGYLDMAQGM
201: LIDPPPMAGS STSGGGGDDD DDDGEVKLWS Y
001: MNSFSAFSEM FGSDYESPVS SGGDYSPKLA TSCPKKPAGR KKFRETRHPI YRGVRQRNSG KWVCELREPN KKTRIWLGTF QTAEMAARAH DVAAIALRGR
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
Arabidopsis Description
DREB1CC-repeat binding factor 2 [Source:UniProtKB/TrEMBL;Acc:B2BIW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.