Factsheet for PGSC0003DMT400037121

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g026280.2.1	Tomato	nucleus	73.26	90.0
PGSC0003DMT400037118	Potato	mitochondrion	43.02	85.38
PGSC0003DMT400037120	Potato	nucleus	74.03	80.93
PGSC0003DMT400037119	Potato	mitochondrion	36.82	77.87
PGSC0003DMT400037122	Potato	nucleus	63.95	76.04
VIT_16s0100g00380.t01	Wine grape	nucleus	53.1	62.84
KRG91437	Soybean	nucleus	45.35	56.52
KRH35383	Soybean	nucleus	44.57	56.1
GSMUA_Achr6P13340_001	Banana	nucleus	40.31	54.45
GSMUA_Achr11P...	Banana	nucleus	43.41	53.85
GSMUA_Achr8P11980_001	Banana	nucleus	43.41	53.08
KRH09144	Soybean	nucleus	47.29	52.81
GSMUA_Achr7P05900_001	Banana	nucleus	41.86	52.43
HORVU5Hr1G041600.1	Barley	nucleus	26.74	51.49
GSMUA_Achr2P20280_001	Banana	nucleus	38.37	49.25
GSMUA_Achr10P...	Banana	nucleus	42.64	48.67
Bra027612.1-P	Field mustard	nucleus	34.88	48.65
CDY49205	Canola	nucleus	34.88	48.65
AT1G63030.2	Thale cress	nucleus	34.11	48.62
Bra016763.1-P	Field mustard	nucleus	37.6	48.02
CDY71145	Canola	nucleus	37.6	48.02
KRH77483	Soybean	nucleus	41.47	47.35
PGSC0003DMT400010876	Potato	nucleus	37.98	47.34
CDY16016	Canola	nucleus	36.82	47.26
GSMUA_Achr8P16070_001	Banana	nucleus, plastid	35.27	47.15
Bra019777.1-P	Field mustard	nucleus	37.6	47.09
CDY31270	Canola	nucleus	36.82	47.03
CDY57075	Canola	nucleus	37.6	46.86
Bra026963.1-P	Field mustard	nucleus	36.82	46.34
CDY26574	Canola	nucleus	36.82	46.34
PGSC0003DMT400088795	Potato	nucleus	37.6	45.97
AT1G12610.1	Thale cress	nucleus	36.43	44.98
Os01t0968800-00	Rice	nucleus	37.98	44.75
TraesCS6A01G256900.1	Wheat	nucleus	37.21	44.24
TraesCS6B01G268100.1	Wheat	nucleus	37.21	44.24
TraesCS6D01G238200.1	Wheat	nucleus	37.21	44.24
Zm00001d002618_P001	Maize	nucleus	37.98	44.14
HORVU0Hr1G016540.1	Barley	nucleus	36.82	43.78
Os02t0677300-02	Rice	nucleus	37.98	43.75
Os04t0572400-00	Rice	nucleus	36.82	43.38
Os06t0127100-01	Rice	nucleus	35.66	42.99
PGSC0003DMT400032622	Potato	nucleus	39.53	42.86
TraesCS2A01G399500.1	Wheat	nucleus, plastid	36.05	42.66
EES02136	Sorghum	nucleus	39.92	42.56
KRH57258	Soybean	nucleus	41.86	42.52
TraesCS2D01G397000.1	Wheat	nucleus	35.66	42.4
PGSC0003DMT400032621	Potato	nucleus	39.92	42.21
Zm00001d041981_P001	Maize	nucleus	39.53	41.63
KRH03987	Soybean	nucleus	41.09	41.57
EES11288	Sorghum	nucleus	36.43	41.41
TraesCS2D01G015200.1	Wheat	nucleus	30.62	41.36
Zm00001d017592_P001	Maize	nucleus	36.82	41.13
TraesCS2B01G002700.1	Wheat	nucleus, plastid	30.23	41.05
TraesCS2B01G417500.1	Wheat	nucleus	33.33	40.38
PGSC0003DMT400006896	Potato	cytosol	20.93	40.3
TraesCS5D01G317700.1	Wheat	nucleus	32.56	39.62
TraesCS7A01G057800.1	Wheat	nucleus, plastid	32.17	39.52
HORVU7Hr1G010510.2	Barley	nucleus	31.4	39.51
TraesCS7D01G052400.1	Wheat	nucleus	33.33	39.27
HORVU5Hr1G080400.1	Barley	nucleus, plastid	15.89	39.05
TraesCS4A01G433300.1	Wheat	nucleus	32.56	38.89
TraesCS7D01G052600.1	Wheat	nucleus	33.72	38.84
TraesCS5B01G311500.1	Wheat	nucleus	31.78	38.68
TraesCS5B01G311600.1	Wheat	nucleus	30.23	38.61
TraesCS5D01G318200.1	Wheat	nucleus, plastid	34.5	38.53
TraesCS5D01G318300.1	Wheat	nucleus	31.78	38.32
HORVU6Hr1G065580.4	Barley	nucleus, plastid	33.33	38.22
HORVU5Hr1G080340.1	Barley	nucleus, plastid	34.5	38.2
TraesCS4A01G433200.1	Wheat	nucleus	33.72	38.16
PGSC0003DMT400032623	Potato	nucleus	36.82	38.15
TraesCS5D01G317800.1	Wheat	nucleus	29.84	38.12
TraesCS5A01G311800.1	Wheat	plastid	36.05	38.11
PGSC0003DMT400090651	Potato	nucleus	48.45	37.99
TraesCS5D01G318800.1	Wheat	nucleus, plastid	35.27	37.92
TraesCS5B01G312700.1	Wheat	nucleus	35.66	37.86
HORVU5Hr1G080350.1	Barley	nucleus	31.4	37.85
TraesCS5B01G312000.1	Wheat	nucleus	31.4	37.85
TraesCS5B01G311400.1	Wheat	nucleus	32.56	37.84
TraesCS7A01G057700.1	Wheat	nucleus	32.95	37.78
TraesCS5D01G318600.1	Wheat	nucleus	34.11	37.77
HORVU5Hr1G080430.1	Barley	nucleus	35.27	37.76
TraesCS5A01G310200.1	Wheat	nucleus	31.01	37.74
TraesCS5A01G311300.1	Wheat	nucleus	31.01	37.74
TraesCS5D01G317200.1	Wheat	nucleus	31.01	37.56
HORVU6Hr1G089320.1	Barley	nucleus	32.56	37.5
TraesCS5B01G312800.1	Wheat	plastid	34.88	37.5
TraesCS1B01G335100.1	Wheat	nucleus	32.17	37.39
TraesCS5A01G311700.1	Wheat	nucleus	33.72	37.34
TraesCS5B01G312300.1	Wheat	nucleus	33.72	37.34
TraesCS5D01G318000.1	Wheat	nucleus	31.78	37.27
TraesCS5A01G311900.1	Wheat	nucleus	34.5	37.24
TraesCS5D01G318400.1	Wheat	nucleus	34.5	37.24
TraesCS5B01G311900.1	Wheat	plastid	33.72	37.18
TraesCS5D01G318100.1	Wheat	nucleus, plastid	33.72	37.18
TraesCS5B01G310900.1	Wheat	nucleus	25.19	37.14
TraesCS5A01G310800.1	Wheat	nucleus	31.01	37.04
TraesCS5A01G311500.1	Wheat	nucleus, plastid	34.11	36.97
TraesCS5A01G310700.1	Wheat	nucleus	31.78	36.94
TraesCS5A01G311000.1	Wheat	nucleus	31.4	36.82
TraesCS5B01G311700.1	Wheat	nucleus	31.4	36.82
Zm00001d052732_P001	Maize	plastid	31.78	36.77
TraesCS5A01G311100.1	Wheat	nucleus	33.33	36.75
TraesCS6D01G365800.1	Wheat	nucleus	34.88	36.73
TraesCS6A01G186400.1	Wheat	plastid	33.72	36.71
KRH38616	Soybean	plastid	46.51	36.7
HORVU5Hr1G080310.1	Barley	nucleus	31.4	36.65
Zm00001d036003_P001	Maize	nucleus	32.95	36.64
TraesCS5B01G311200.1	Wheat	nucleus	32.17	36.56
TraesCS7D01G052500.1	Wheat	nucleus	32.17	36.56
TraesCS5B01G312900.1	Wheat	nucleus	34.5	36.48
HORVU5Hr1G080300.1	Barley	nucleus	31.78	36.44
TraesCS6A01G381200.1	Wheat	plastid	34.5	36.33
EER87753	Sorghum	nucleus	34.88	36.14
TraesCS6B01G218000.1	Wheat	plastid	34.11	36.07
TraesCS6D01G366100.1	Wheat	nucleus	34.11	36.07
TraesCS5A01G310600.1	Wheat	nucleus	31.4	36.0
TraesCS5B01G312100.1	Wheat	nucleus, plastid	33.33	35.98
TraesCS6B01G420100.1	Wheat	nucleus	34.11	35.92
TraesCS5D01G317500.1	Wheat	nucleus	31.4	35.84
Os09t0522100-00	Rice	nucleus	34.11	35.77
TraesCS6A01G381000.1	Wheat	nucleus	34.11	35.77
Zm00001d031728_P001	Maize	nucleus, plastid	31.4	35.68
TraesCS5A01G310400.1	Wheat	nucleus	31.78	35.65
TraesCS5D01G317300.1	Wheat	nucleus	31.78	35.65
Zm00001d006170_P001	Maize	nucleus	31.78	35.65
TraesCS6D01G173500.1	Wheat	plastid	33.33	35.39
Os09t0522200-01	Rice	nucleus	32.56	35.29
HORVU5Hr1G080220.2	Barley	nucleus	30.62	35.27
EER99213	Sorghum	nucleus	31.78	34.89
Zm00001d021207_P001	Maize	nucleus	32.17	34.87
Zm00001d021208_P001	Maize	plastid	31.01	34.63
HORVU5Hr1G080440.2	Barley	nucleus, plastid	32.56	34.29
EER99212	Sorghum	nucleus, plastid	31.78	34.17
Zm00001d021205_P001	Maize	plastid	32.56	34.15
TraesCS5A01G310000.1	Wheat	plastid	32.56	34.01
TraesCS5B01G312200.1	Wheat	nucleus	32.17	33.88
HORVU5Hr1G080420.1	Barley	nucleus, plastid	37.21	33.8
TraesCS5B01G313000.1	Wheat	nucleus	30.62	33.47
TraesCS5A01G311600.1	Wheat	nucleus	31.78	33.47
EES14131	Sorghum	nucleus, plastid	31.01	33.33
TraesCS5D01G318500.1	Wheat	nucleus	31.4	33.33
EER99214	Sorghum	plastid	31.4	33.2
TraesCS5A01G312000.1	Wheat	plastid	31.01	33.06
TraesCS5D01G317900.1	Wheat	nucleus	30.62	32.92
TraesCS5D01G318900.1	Wheat	nucleus	30.23	32.77
GSMUA_Achr4P19660_001	Banana	mitochondrion, nucleus	39.92	32.39
HORVU5Hr1G080380.1	Barley	nucleus, plastid	32.56	31.34
EER99211	Sorghum	plastid	33.33	31.27
Zm00001d006169_P001	Maize	plastid	31.78	31.06
TraesCS5A01G310100.1	Wheat	nucleus	32.17	30.86
TraesCS5B01G310800.1	Wheat	nucleus	32.17	30.86
TraesCS5A01G310500.1	Wheat	nucleus, plastid	32.56	30.55
TraesCS5D01G317600.1	Wheat	nucleus, plastid	26.36	30.49
TraesCS5D01G317100.1	Wheat	nucleus, plastid	31.78	30.48
TraesCS5D01G317400.1	Wheat	nucleus	32.17	30.18
TraesCS5A01G310900.1	Wheat	mitochondrion	19.77	28.98
HORVU5Hr1G080230.1	Barley	nucleus	31.78	28.18
OQU85641	Sorghum	nucleus	35.66	27.63
HORVU5Hr1G080450.1	Barley	nucleus, plastid	31.01	26.58
TraesCS5B01G311300.1	Wheat	nucleus	29.46	26.21
OQU89795	Sorghum	mitochondrion, nucleus	33.72	25.97
Os06t0165600-01	Rice	nucleus, plastid	23.26	23.72

Protein Annotations

MapMan:15.5.7.2	MapMan:26.4.3.4.2	Gene3D:3.30.730.10	ProteinID:ABI94367	ProteinID:ABI94367.1	ProteinID:ACB45096
ProteinID:ACB45096.1	ProteinID:ACJ26752	ProteinID:ACJ26752.1	ProteinID:ACJ26753	ProteinID:ACJ26753.1	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	EMBL:DQ888317	EMBL:EU365384	EMBL:EU849673	EMBL:EU849674
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:M1B4U8	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400014310	PGSC:PGSC0003DMG400014310	EnsemblPlants:PGSC0003DMT400037121	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31839	PANTHER:PTHR31839:SF8	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002961559
SEG:seg	:	:	:	:	:

Description

AP2 domain CBF protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014310]

Coordinates

chr3:-:42089264..42090616

Molecular Weight (calculated)

28603.0 Da

IEP (calculated)

4.247

GRAVY (calculated)

-0.559

Length

258 amino acids

Sequence
(BLAST)

001: MNIFETYYSD PLILTESSSS SSSSSDEEII LASNNPKRPA GRKKFRETRH PIYRGIRMRN SGKWVCEVRE PNKKSRIWLG TFPTAEMAAR AHDVAALALR
101: GRSACLNFAD SAWRLPIPAS SNSKDIQKAA AEAAEIFRPS SSSEESEEVS GESDYSTPET PENAFSAAAE IFRPSSEESE EVSGESDNST PETPENAFFM
201: NEEAPESSFF MDEEALFFMP GLIANMAEGL MLPPPQCAEM GDHYVEADAY MTLWNYSI

Best Arabidopsis Sequence Match ( AT4G25480.1 )
(BLAST)

001: MNSFSAFSEM FGSDYESSVS SGGDYIPTLA SSCPKKPAGR KKFRETRHPI YRGVRRRNSG KWVCEVREPN KKTRIWLGTF QTAEMAARAH DVAALALRGR
101: SACLNFADSA WRLRIPESTC AKDIQKAAAE AALAFQDEMC DATTDHGFDM EETLVEAIYT AEQSENAFYM HDEAMFEMPS LLANMAEGML LPLPSVQWNH
201: NHEVDGDDDD VSLWSY

Arabidopsis Description

DREB1ADehydration-responsive element-binding protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q9M0L0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.