Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G034070.1 | |
| HORVU5Hr1G095400.7 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25490.1 | HORVU1Hr1G034070.1 | AT3G54610.1 | 16603259 |
| AT4G25490.1 | HORVU5Hr1G095400.7 | AT4G16420.1 | 16603259 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G311700.1 | Wheat | nucleus | 86.94 | 91.42 |
| TraesCS5D01G318600.1 | Wheat | nucleus | 86.12 | 90.56 |
| TraesCS5B01G312300.1 | Wheat | nucleus | 85.71 | 90.13 |
| HORVU5Hr1G080380.1 | Barley | nucleus, plastid | 71.84 | 65.67 |
| HORVU5Hr1G080340.1 | Barley | nucleus, plastid | 60.41 | 63.52 |
| HORVU6Hr1G089320.1 | Barley | nucleus | 56.33 | 61.61 |
| Os09t0522100-00 | Rice | nucleus | 59.18 | 58.94 |
| Zm00001d021205_P001 | Maize | plastid | 56.73 | 56.5 |
| HORVU5Hr1G080430.1 | Barley | nucleus | 55.1 | 56.02 |
| HORVU5Hr1G080420.1 | Barley | nucleus, plastid | 61.22 | 52.82 |
| Zm00001d006169_P001 | Maize | plastid | 55.1 | 51.14 |
| EER99211 | Sorghum | plastid | 55.92 | 49.82 |
| HORVU5Hr1G080400.1 | Barley | nucleus, plastid | 20.0 | 46.67 |
| HORVU5Hr1G041600.1 | Barley | nucleus | 25.31 | 46.27 |
| HORVU5Hr1G080350.1 | Barley | nucleus | 40.0 | 45.79 |
| AT1G63030.2 | Thale cress | nucleus | 32.24 | 43.65 |
| HORVU5Hr1G080300.1 | Barley | nucleus | 39.18 | 42.67 |
| HORVU5Hr1G080310.1 | Barley | nucleus | 38.37 | 42.53 |
| Solyc03g026270.1.1 | Tomato | nucleus | 34.29 | 40.98 |
| HORVU5Hr1G080220.2 | Barley | nucleus | 37.14 | 40.62 |
| HORVU0Hr1G016540.1 | Barley | nucleus | 35.92 | 40.55 |
| CDY49205 | Canola | nucleus | 30.61 | 40.54 |
| Bra027612.1-P | Field mustard | nucleus | 30.61 | 40.54 |
| HORVU5Hr1G080450.1 | Barley | nucleus, plastid | 49.39 | 40.2 |
| Bra019162.1-P | Field mustard | nucleus | 34.69 | 39.72 |
| CDY70584 | Canola | nucleus | 34.69 | 39.72 |
| PGSC0003DMT400037122 | Potato | nucleus | 35.1 | 39.63 |
| Bra016763.1-P | Field mustard | nucleus | 32.65 | 39.6 |
| CDY71145 | Canola | nucleus | 32.65 | 39.6 |
| CDX92710 | Canola | nucleus | 34.69 | 39.53 |
| CDY57075 | Canola | nucleus | 33.06 | 39.13 |
| CDY31270 | Canola | nucleus | 32.24 | 39.11 |
| Solyc03g026280.2.1 | Tomato | nucleus | 33.47 | 39.05 |
| Bra019777.1-P | Field mustard | nucleus | 32.65 | 38.84 |
| CDY16016 | Canola | nucleus | 31.84 | 38.81 |
| Bra022770.1-P | Field mustard | nucleus | 33.88 | 38.78 |
| CDX84868 | Canola | nucleus | 33.88 | 38.78 |
| PGSC0003DMT400010876 | Potato | nucleus | 32.65 | 38.65 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 34.29 | 38.53 |
| Solyc12g056430.1.1 | Tomato | nucleus | 31.84 | 38.42 |
| CDY66018 | Canola | nucleus | 33.47 | 38.32 |
| AT1G12610.1 | Thale cress | nucleus | 32.65 | 38.28 |
| Solyc03g124110.1.1 | Tomato | nucleus | 34.29 | 38.18 |
| Bra026963.1-P | Field mustard | nucleus | 31.84 | 38.05 |
| CDY26574 | Canola | nucleus | 31.84 | 38.05 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 35.92 | 37.45 |
| AT4G25490.1 | Thale cress | nucleus | 32.24 | 37.09 |
| AT4G25470.1 | Thale cress | nucleus | 32.65 | 37.04 |
| CDY52356 | Canola | nucleus | 32.65 | 36.87 |
| KRG91437 | Soybean | nucleus | 31.02 | 36.72 |
| CDY52360 | Canola | nucleus | 33.06 | 36.65 |
| AT4G25480.1 | Thale cress | nucleus | 32.24 | 36.57 |
| Bra028290.1-P | Field mustard | nucleus | 32.65 | 36.36 |
| CDY00510 | Canola | nucleus | 32.65 | 36.36 |
| PGSC0003DMT400032622 | Potato | nucleus | 35.1 | 36.13 |
| KRH35383 | Soybean | nucleus | 30.2 | 36.1 |
| HORVU6Hr1G065580.4 | Barley | nucleus, plastid | 33.06 | 36.0 |
| CDY31925 | Canola | nucleus | 32.24 | 35.91 |
| AT5G51990.1 | Thale cress | nucleus | 32.65 | 35.71 |
| CDY65499 | Canola | nucleus | 31.43 | 35.65 |
| Solyc08g007820.1.1 | Tomato | nucleus | 35.1 | 35.25 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 17.55 | 35.25 |
| PGSC0003DMT400037120 | Potato | nucleus | 33.88 | 35.17 |
| PGSC0003DMT400032621 | Potato | nucleus | 34.69 | 34.84 |
| HORVU7Hr1G010510.2 | Barley | nucleus | 28.98 | 34.63 |
| HORVU5Hr1G080230.1 | Barley | nucleus | 40.41 | 34.02 |
| KRH77483 | Soybean | nucleus | 31.02 | 33.63 |
| Solyc08g007830.1.1 | Tomato | nucleus | 31.02 | 33.19 |
| KRH03987 | Soybean | nucleus | 34.29 | 32.94 |
| PGSC0003DMT400037121 | Potato | nucleus | 34.29 | 32.56 |
| KRH57258 | Soybean | nucleus | 33.06 | 31.89 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 16.73 | 31.54 |
| Bra010461.1-P | Field mustard | nucleus | 33.06 | 31.4 |
| CDY52358 | Canola | nucleus | 24.08 | 31.22 |
| KRH09144 | Soybean | nucleus | 29.39 | 31.17 |
| PGSC0003DMT400032623 | Potato | nucleus | 31.43 | 30.92 |
| CDY66013 | Canola | nucleus | 24.08 | 30.89 |
| PGSC0003DMT400006896 | Potato | cytosol | 15.92 | 29.1 |
| Bra010460.1-P | Field mustard | nucleus | 32.65 | 29.09 |
| Bra010463.1-P | Field mustard | nucleus | 24.9 | 27.23 |
| PGSC0003DMT400090651 | Potato | nucleus | 31.43 | 23.4 |
| KRH38616 | Soybean | plastid | 30.2 | 22.63 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | UniProt:A0A287RZ73 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU5Hr1G080440 | EnsemblPlants:HORVU5Hr1G080440.2 |
| InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PFscan:PS51032 | PANTHER:PTHR31839 | PANTHER:PTHR31839:SF5 |
| SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI000B46BD4B | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr5H:-:560627947..560628684
Molecular Weight (calculated)
25803.7 Da
IEP (calculated)
5.941
GRAVY (calculated)
-0.475
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: RPPSTVRRSS SQHRPPAAMD MTGSDQQWSS SSSPSSTSSH PKRPAGRTKF KETRHPVYRG VRRRGNAGRW VCEVRVPGQR GERLWLGTYL TADAAARAHD
101: AAMIGLLGHS AACLNFPDSA WLLAVPPALS DLAAVRRAAL AAVADFQRRH AGNGAATVPA DEDTSSADNA GGSSATSQPS AEGTFEVPSA LGSDMFELDL
201: SGEMDLGTYY ADLAEGMLLE PPPSLDSGAC WDAGDGGADY GPWSY
101: AAMIGLLGHS AACLNFPDSA WLLAVPPALS DLAAVRRAAL AAVADFQRRH AGNGAATVPA DEDTSSADNA GGSSATSQPS AEGTFEVPSA LGSDMFELDL
201: SGEMDLGTYY ADLAEGMLLE PPPSLDSGAC WDAGDGGADY GPWSY
001: MNSFSAFSEM FGSDYESPVS SGGDYSPKLA TSCPKKPAGR KKFRETRHPI YRGVRQRNSG KWVCELREPN KKTRIWLGTF QTAEMAARAH DVAAIALRGR
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
Arabidopsis Description
DREB1CC-repeat binding factor 2 [Source:UniProtKB/TrEMBL;Acc:B2BIW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.