Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G034070.1 | |
| HORVU5Hr1G095400.7 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25490.1 | HORVU1Hr1G034070.1 | AT3G54610.1 | 16603259 |
| AT4G25490.1 | HORVU5Hr1G095400.7 | AT4G16420.1 | 16603259 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G318000.1 | Wheat | nucleus | 89.14 | 89.55 |
| TraesCS5A01G311000.1 | Wheat | nucleus | 88.24 | 88.64 |
| TraesCS5B01G311700.1 | Wheat | nucleus | 87.78 | 88.18 |
| HORVU5Hr1G080220.2 | Barley | nucleus | 79.19 | 78.12 |
| HORVU5Hr1G080300.1 | Barley | nucleus | 59.28 | 58.22 |
| HORVU5Hr1G080350.1 | Barley | nucleus | 52.94 | 54.67 |
| HORVU5Hr1G041600.1 | Barley | nucleus | 27.15 | 44.78 |
| HORVU5Hr1G080230.1 | Barley | nucleus | 57.92 | 43.99 |
| HORVU0Hr1G016540.1 | Barley | nucleus | 41.63 | 42.4 |
| AT1G63030.2 | Thale cress | nucleus | 33.94 | 41.44 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 40.72 | 41.28 |
| KRG91437 | Soybean | nucleus | 38.01 | 40.58 |
| Bra027612.1-P | Field mustard | nucleus | 33.94 | 40.54 |
| CDY49205 | Canola | nucleus | 33.94 | 40.54 |
| KRH35383 | Soybean | nucleus | 37.1 | 40.0 |
| HORVU5Hr1G080340.1 | Barley | nucleus, plastid | 42.08 | 39.91 |
| CDY16016 | Canola | nucleus | 36.2 | 39.8 |
| Solyc03g026270.1.1 | Tomato | nucleus | 36.65 | 39.51 |
| Bra016763.1-P | Field mustard | nucleus | 35.75 | 39.11 |
| CDY71145 | Canola | nucleus | 35.75 | 39.11 |
| CDX92710 | Canola | nucleus | 38.01 | 39.07 |
| Bra026963.1-P | Field mustard | nucleus | 36.2 | 39.02 |
| CDY26574 | Canola | nucleus | 36.2 | 39.02 |
| HORVU5Hr1G080440.2 | Barley | nucleus, plastid | 42.53 | 38.37 |
| Bra019777.1-P | Field mustard | nucleus | 35.75 | 38.35 |
| Bra019162.1-P | Field mustard | nucleus | 37.1 | 38.32 |
| CDY70584 | Canola | nucleus | 37.1 | 38.32 |
| HORVU6Hr1G065580.4 | Barley | nucleus, plastid | 38.91 | 38.22 |
| CDY57075 | Canola | nucleus | 35.75 | 38.16 |
| CDY31270 | Canola | nucleus | 34.84 | 38.12 |
| Solyc03g026280.2.1 | Tomato | nucleus | 36.2 | 38.1 |
| PGSC0003DMT400037122 | Potato | nucleus | 37.1 | 37.79 |
| AT4G25490.1 | Thale cress | nucleus | 36.2 | 37.56 |
| AT4G25480.1 | Thale cress | nucleus | 36.65 | 37.5 |
| AT4G25470.1 | Thale cress | nucleus | 36.65 | 37.5 |
| CDY66018 | Canola | nucleus | 36.2 | 37.38 |
| CDX84868 | Canola | nucleus | 36.2 | 37.38 |
| Bra022770.1-P | Field mustard | nucleus | 36.2 | 37.38 |
| CDY52356 | Canola | nucleus | 36.65 | 37.33 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 20.36 | 36.89 |
| CDY00510 | Canola | nucleus | 36.65 | 36.82 |
| Bra028290.1-P | Field mustard | nucleus | 36.65 | 36.82 |
| CDY52360 | Canola | nucleus | 36.65 | 36.65 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 38.91 | 36.6 |
| CDY65499 | Canola | nucleus | 35.75 | 36.57 |
| AT1G12610.1 | Thale cress | nucleus | 34.39 | 36.36 |
| KRH77483 | Soybean | nucleus | 37.1 | 36.28 |
| PGSC0003DMT400010876 | Potato | nucleus | 33.94 | 36.23 |
| HORVU6Hr1G089320.1 | Barley | nucleus | 36.65 | 36.16 |
| OQU89795 | Sorghum | mitochondrion, nucleus | 54.75 | 36.12 |
| Solyc03g124110.1.1 | Tomato | nucleus | 35.75 | 35.91 |
| CDY31925 | Canola | nucleus | 35.75 | 35.91 |
| HORVU5Hr1G080430.1 | Barley | nucleus | 38.91 | 35.68 |
| Solyc12g056430.1.1 | Tomato | nucleus | 32.58 | 35.47 |
| AT5G51990.1 | Thale cress | nucleus | 35.75 | 35.27 |
| HORVU5Hr1G080400.1 | Barley | nucleus, plastid | 16.74 | 35.24 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 20.36 | 34.62 |
| PGSC0003DMT400037120 | Potato | nucleus | 36.65 | 34.32 |
| KRH09144 | Soybean | nucleus | 35.75 | 34.2 |
| Solyc08g007830.1.1 | Tomato | nucleus | 34.84 | 33.62 |
| PGSC0003DMT400032622 | Potato | nucleus | 36.2 | 33.61 |
| HORVU5Hr1G080380.1 | Barley | nucleus, plastid | 40.72 | 33.58 |
| HORVU7Hr1G010510.2 | Barley | nucleus | 30.77 | 33.17 |
| KRH57258 | Soybean | nucleus | 37.1 | 32.28 |
| HORVU5Hr1G080420.1 | Barley | nucleus, plastid | 41.18 | 32.04 |
| PGSC0003DMT400032621 | Potato | nucleus | 35.29 | 31.97 |
| Solyc08g007820.1.1 | Tomato | nucleus | 35.29 | 31.97 |
| CDY66013 | Canola | nucleus | 27.15 | 31.41 |
| Bra010461.1-P | Field mustard | nucleus | 36.65 | 31.4 |
| PGSC0003DMT400037121 | Potato | nucleus | 36.65 | 31.4 |
| CDY52358 | Canola | nucleus | 26.7 | 31.22 |
| KRH03987 | Soybean | nucleus | 35.75 | 30.98 |
| HORVU5Hr1G080450.1 | Barley | nucleus, plastid | 40.72 | 29.9 |
| PGSC0003DMT400032623 | Potato | nucleus | 33.48 | 29.72 |
| Bra010460.1-P | Field mustard | nucleus | 36.65 | 29.45 |
| Bra010463.1-P | Field mustard | nucleus | 27.6 | 27.23 |
| PGSC0003DMT400006896 | Potato | cytosol | 16.29 | 26.87 |
| PGSC0003DMT400090651 | Potato | nucleus | 36.65 | 24.62 |
| KRH38616 | Soybean | plastid | 35.75 | 24.16 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | ProteinID:AAX23687.1 | ProteinID:AAX23688.1 | ProteinID:AAX23689.1 | ProteinID:ABE02624.1 |
| ProteinID:ABE02635.1 | ProteinID:ABF18983.1 | ProteinID:ADD62589.1 | ProteinID:ADD62590.1 | ProteinID:AGW47705.1 | InterPro:AP2/ERF_dom |
| InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:HORVU5Hr1G080310 | EnsemblPlants:HORVU5Hr1G080310.1 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PFscan:PS51032 |
| PANTHER:PTHR31839 | PANTHER:PTHR31839:SF9 | UniProt:Q3T5Q3 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI00005B29A6 |
| SEG:seg | : | : | : | : | : |
Description
C-repeat binding factor 2A [Source:UniProtKB/TrEMBL;Acc:Q3T5Q3]
Coordinates
chrchr5H:-:559687941..559688606
Molecular Weight (calculated)
24578.5 Da
IEP (calculated)
4.741
GRAVY (calculated)
-0.516
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTVAAWPQF EEQDYMTVWP EEQEYRTVWS EPPKRRAGRI KLQETRHPVY RGVRRRGKVG QWVCELRVPV SRGYSRLWLG TFANPEMAAR AHDSAALALS
101: GHDACLNFAD SAWRMMPVHA TGSFRLAPAQ EIKDAVAVAL EVFQGQHPAD ACTAEESTTP ITSSDLSGLD DEHWIGGMDA GSYYASLAQG MLMEPPAAGG
201: WREDDGEHDD GFNTSASLWS Y
101: GHDACLNFAD SAWRMMPVHA TGSFRLAPAQ EIKDAVAVAL EVFQGQHPAD ACTAEESTTP ITSSDLSGLD DEHWIGGMDA GSYYASLAQG MLMEPPAAGG
201: WREDDGEHDD GFNTSASLWS Y
001: MNSFSAFSEM FGSDYESPVS SGGDYSPKLA TSCPKKPAGR KKFRETRHPI YRGVRQRNSG KWVCELREPN KKTRIWLGTF QTAEMAARAH DVAAIALRGR
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
Arabidopsis Description
DREB1CC-repeat binding factor 2 [Source:UniProtKB/TrEMBL;Acc:B2BIW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.