Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G034070.1 | |
| HORVU5Hr1G095400.7 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25490.1 | HORVU1Hr1G034070.1 | AT3G54610.1 | 16603259 |
| AT4G25490.1 | HORVU5Hr1G095400.7 | AT4G16420.1 | 16603259 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G310600.1 | Wheat | nucleus | 89.29 | 88.89 |
| TraesCS5D01G317500.1 | Wheat | nucleus | 88.84 | 88.05 |
| TraesCS5D01G317300.1 | Wheat | nucleus | 83.48 | 81.3 |
| TraesCS5A01G310400.1 | Wheat | nucleus | 82.59 | 80.43 |
| TraesCS5B01G311200.1 | Wheat | nucleus | 81.25 | 80.18 |
| HORVU5Hr1G080310.1 | Barley | nucleus | 78.12 | 79.19 |
| HORVU5Hr1G080300.1 | Barley | nucleus | 57.59 | 57.33 |
| HORVU5Hr1G080350.1 | Barley | nucleus | 53.12 | 55.61 |
| HORVU5Hr1G041600.1 | Barley | nucleus | 26.34 | 44.03 |
| HORVU5Hr1G080230.1 | Barley | nucleus | 57.14 | 43.99 |
| AT1G63030.2 | Thale cress | nucleus | 34.82 | 43.09 |
| CDY49205 | Canola | nucleus | 34.38 | 41.62 |
| Bra027612.1-P | Field mustard | nucleus | 34.38 | 41.62 |
| HORVU0Hr1G016540.1 | Barley | nucleus | 39.29 | 40.55 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 39.29 | 40.37 |
| KRG91437 | Soybean | nucleus | 37.05 | 40.1 |
| KRH35383 | Soybean | nucleus | 36.61 | 40.0 |
| CDY16016 | Canola | nucleus | 35.71 | 39.8 |
| Bra016763.1-P | Field mustard | nucleus | 35.71 | 39.6 |
| CDY71145 | Canola | nucleus | 35.71 | 39.6 |
| CDY26574 | Canola | nucleus | 35.71 | 39.02 |
| Bra026963.1-P | Field mustard | nucleus | 35.71 | 39.02 |
| CDY31270 | Canola | nucleus | 34.82 | 38.61 |
| Solyc03g026270.1.1 | Tomato | nucleus | 35.27 | 38.54 |
| Bra019777.1-P | Field mustard | nucleus | 35.27 | 38.35 |
| HORVU5Hr1G080340.1 | Barley | nucleus, plastid | 39.73 | 38.2 |
| CDY57075 | Canola | nucleus | 35.27 | 38.16 |
| CDX92710 | Canola | nucleus | 36.61 | 38.14 |
| AT4G25480.1 | Thale cress | nucleus | 36.61 | 37.96 |
| CDY52356 | Canola | nucleus | 36.61 | 37.79 |
| PGSC0003DMT400037122 | Potato | nucleus | 36.61 | 37.79 |
| CDY00510 | Canola | nucleus | 37.05 | 37.73 |
| Bra028290.1-P | Field mustard | nucleus | 37.05 | 37.73 |
| AT4G25490.1 | Thale cress | nucleus | 35.71 | 37.56 |
| AT4G25470.1 | Thale cress | nucleus | 36.16 | 37.5 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 39.29 | 37.45 |
| Bra019162.1-P | Field mustard | nucleus | 35.71 | 37.38 |
| CDY70584 | Canola | nucleus | 35.71 | 37.38 |
| AT1G12610.1 | Thale cress | nucleus | 34.82 | 37.32 |
| CDY31925 | Canola | nucleus | 36.61 | 37.27 |
| HORVU5Hr1G080440.2 | Barley | nucleus, plastid | 40.62 | 37.14 |
| CDY52360 | Canola | nucleus | 36.61 | 37.1 |
| CDY65499 | Canola | nucleus | 35.71 | 37.04 |
| CDX84868 | Canola | nucleus | 35.27 | 36.92 |
| Bra022770.1-P | Field mustard | nucleus | 35.27 | 36.92 |
| CDY66018 | Canola | nucleus | 35.27 | 36.92 |
| HORVU6Hr1G065580.4 | Barley | nucleus, plastid | 37.05 | 36.89 |
| PGSC0003DMT400010876 | Potato | nucleus | 33.93 | 36.72 |
| Solyc03g026280.2.1 | Tomato | nucleus | 34.38 | 36.67 |
| HORVU5Hr1G080430.1 | Barley | nucleus | 39.29 | 36.51 |
| HORVU6Hr1G089320.1 | Barley | nucleus | 36.16 | 36.16 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 19.64 | 36.07 |
| Solyc12g056430.1.1 | Tomato | nucleus | 32.59 | 35.96 |
| AT5G51990.1 | Thale cress | nucleus | 35.71 | 35.71 |
| HORVU5Hr1G080400.1 | Barley | nucleus, plastid | 16.52 | 35.24 |
| HORVU7Hr1G010510.2 | Barley | nucleus | 32.14 | 35.12 |
| KRH77483 | Soybean | nucleus | 35.27 | 34.96 |
| OQU89795 | Sorghum | mitochondrion, nucleus | 51.34 | 34.33 |
| Solyc03g124110.1.1 | Tomato | nucleus | 33.48 | 34.09 |
| PGSC0003DMT400032622 | Potato | nucleus | 36.16 | 34.03 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 19.64 | 33.85 |
| KRH09144 | Soybean | nucleus | 34.38 | 33.33 |
| PGSC0003DMT400037120 | Potato | nucleus | 34.38 | 32.63 |
| CDY66013 | Canola | nucleus | 27.68 | 32.46 |
| Solyc08g007820.1.1 | Tomato | nucleus | 35.27 | 32.38 |
| CDY52358 | Canola | nucleus | 27.23 | 32.28 |
| Bra010461.1-P | Field mustard | nucleus | 37.05 | 32.17 |
| HORVU5Hr1G080380.1 | Barley | nucleus, plastid | 38.39 | 32.09 |
| PGSC0003DMT400032621 | Potato | nucleus | 34.82 | 31.97 |
| HORVU5Hr1G080420.1 | Barley | nucleus, plastid | 40.18 | 31.69 |
| Solyc08g007830.1.1 | Tomato | nucleus | 32.14 | 31.44 |
| KRH57258 | Soybean | nucleus | 34.82 | 30.71 |
| PGSC0003DMT400037121 | Potato | nucleus | 35.27 | 30.62 |
| KRH03987 | Soybean | nucleus | 34.38 | 30.2 |
| Bra010460.1-P | Field mustard | nucleus | 36.61 | 29.82 |
| HORVU5Hr1G080450.1 | Barley | nucleus, plastid | 39.29 | 29.24 |
| PGSC0003DMT400032623 | Potato | nucleus | 31.7 | 28.51 |
| Bra010463.1-P | Field mustard | nucleus | 27.68 | 27.68 |
| KRH38616 | Soybean | plastid | 36.61 | 25.08 |
| PGSC0003DMT400090651 | Potato | nucleus | 34.38 | 23.4 |
| PGSC0003DMT400006896 | Potato | cytosol | 13.84 | 23.13 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | UniProt:A0A023IND4 | ProteinID:AGW47700.1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU5Hr1G080220 |
| EnsemblPlants:HORVU5Hr1G080220.2 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31839 | PANTHER:PTHR31839:SF9 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI00045BF838 | SEG:seg |
Description
CBF2C [Source:UniProtKB/TrEMBL;Acc:A0A023IND4]
Coordinates
chrchr5H:+:559453057..559453731
Molecular Weight (calculated)
24894.0 Da
IEP (calculated)
5.140
GRAVY (calculated)
-0.480
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTVAAWPQY GGQEYRTVWP EEEYRTVWSE PPKRRAGRSK LQETRHPLYR GVRRRGREGQ WVCELRVPAG SRAYSRVWLG TFATAQMAAR AHDSAALALS
101: GRDACLNFAD SAWRMMPVHA TGSFRLAAAQ EIKDAVAVAL QVFREEERPA DVSTAPSSAA VVSALSIVPT DLSGLDNEHW IGGMEAGSYY ASLAQAMLME
201: PPDDGAWPED REHDDGFDTS LWSY
101: GRDACLNFAD SAWRMMPVHA TGSFRLAAAQ EIKDAVAVAL QVFREEERPA DVSTAPSSAA VVSALSIVPT DLSGLDNEHW IGGMEAGSYY ASLAQAMLME
201: PPDDGAWPED REHDDGFDTS LWSY
001: MNSFSAFSEM FGSDYESPVS SGGDYSPKLA TSCPKKPAGR KKFRETRHPI YRGVRQRNSG KWVCELREPN KKTRIWLGTF QTAEMAARAH DVAAIALRGR
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
Arabidopsis Description
DREB1CC-repeat binding factor 2 [Source:UniProtKB/TrEMBL;Acc:B2BIW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.