Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G310400.1 | Wheat | nucleus | 97.83 | 97.83 |
| TraesCS5B01G311200.1 | Wheat | nucleus | 95.22 | 96.48 |
| TraesCS5D01G317500.1 | Wheat | nucleus | 87.83 | 89.38 |
| TraesCS5D01G318000.1 | Wheat | nucleus | 82.61 | 86.36 |
| HORVU5Hr1G080220.2 | Barley | nucleus | 81.3 | 83.48 |
| TraesCS5D01G317700.1 | Wheat | nucleus | 56.96 | 61.79 |
| TraesCS5D01G317200.1 | Wheat | nucleus | 56.09 | 60.56 |
| TraesCS5D01G317800.1 | Wheat | nucleus | 51.74 | 58.91 |
| TraesCS5D01G318300.1 | Wheat | nucleus | 52.61 | 56.54 |
| TraesCS5D01G317600.1 | Wheat | nucleus, plastid | 48.7 | 50.22 |
| TraesCS5D01G317100.1 | Wheat | nucleus, plastid | 55.65 | 47.58 |
| TraesCS5D01G317400.1 | Wheat | nucleus | 55.65 | 46.55 |
| TraesCS6D01G238200.1 | Wheat | nucleus | 40.43 | 42.86 |
| TraesCS5D01G318600.1 | Wheat | nucleus | 43.04 | 42.49 |
| TraesCS5D01G318200.1 | Wheat | nucleus, plastid | 42.61 | 42.42 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 40.0 | 42.2 |
| AT1G63030.2 | Thale cress | nucleus | 32.61 | 41.44 |
| KRG91437 | Soybean | nucleus | 36.96 | 41.06 |
| TraesCS5D01G318400.1 | Wheat | nucleus | 42.17 | 40.59 |
| CDY49205 | Canola | nucleus | 32.61 | 40.54 |
| Bra027612.1-P | Field mustard | nucleus | 32.61 | 40.54 |
| Solyc03g026270.1.1 | Tomato | nucleus | 36.09 | 40.49 |
| KRH35383 | Soybean | nucleus | 36.09 | 40.49 |
| TraesCS2D01G015200.1 | Wheat | nucleus | 33.48 | 40.31 |
| TraesCS5D01G318100.1 | Wheat | nucleus, plastid | 40.87 | 40.17 |
| AT4G25490.1 | Thale cress | nucleus | 36.96 | 39.91 |
| AT4G25470.1 | Thale cress | nucleus | 37.39 | 39.81 |
| AT4G25480.1 | Thale cress | nucleus | 37.39 | 39.81 |
| CDY16016 | Canola | nucleus | 34.78 | 39.8 |
| Bra016763.1-P | Field mustard | nucleus | 34.78 | 39.6 |
| CDY71145 | Canola | nucleus | 34.78 | 39.6 |
| TraesCS6D01G365800.1 | Wheat | nucleus | 42.17 | 39.59 |
| CDX92710 | Canola | nucleus | 36.96 | 39.53 |
| TraesCS6D01G173500.1 | Wheat | plastid | 41.74 | 39.51 |
| TraesCS6D01G366100.1 | Wheat | nucleus | 41.74 | 39.34 |
| CDY70584 | Canola | nucleus | 36.52 | 39.25 |
| Bra019162.1-P | Field mustard | nucleus | 36.52 | 39.25 |
| TraesCS2D01G397000.1 | Wheat | nucleus | 36.96 | 39.17 |
| PGSC0003DMT400037122 | Potato | nucleus | 36.96 | 39.17 |
| Bra028290.1-P | Field mustard | nucleus | 37.39 | 39.09 |
| CDY00510 | Canola | nucleus | 37.39 | 39.09 |
| Bra026963.1-P | Field mustard | nucleus | 34.78 | 39.02 |
| CDY26574 | Canola | nucleus | 34.78 | 39.02 |
| Bra019777.1-P | Field mustard | nucleus | 34.78 | 38.84 |
| CDY57075 | Canola | nucleus | 34.78 | 38.65 |
| CDY31270 | Canola | nucleus | 33.91 | 38.61 |
| Solyc03g026280.2.1 | Tomato | nucleus | 35.22 | 38.57 |
| CDX84868 | Canola | nucleus | 35.65 | 38.32 |
| Bra022770.1-P | Field mustard | nucleus | 35.65 | 38.32 |
| CDY66018 | Canola | nucleus | 35.65 | 38.32 |
| CDY52356 | Canola | nucleus | 36.09 | 38.25 |
| CDY31925 | Canola | nucleus | 36.52 | 38.18 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 38.7 | 37.87 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 20.0 | 37.7 |
| CDY52360 | Canola | nucleus | 36.09 | 37.56 |
| AT5G51990.1 | Thale cress | nucleus | 36.52 | 37.5 |
| CDY65499 | Canola | nucleus | 35.22 | 37.5 |
| TraesCS5D01G318800.1 | Wheat | nucleus, plastid | 39.13 | 37.5 |
| AT1G12610.1 | Thale cress | nucleus | 33.91 | 37.32 |
| PGSC0003DMT400010876 | Potato | nucleus | 33.48 | 37.2 |
| TraesCS5D01G318500.1 | Wheat | nucleus | 39.13 | 37.04 |
| TraesCS7D01G052500.1 | Wheat | nucleus | 36.52 | 37.0 |
| TraesCS5D01G318900.1 | Wheat | nucleus | 38.26 | 36.97 |
| OQU89795 | Sorghum | mitochondrion, nucleus | 53.48 | 36.72 |
| TraesCS5D01G317900.1 | Wheat | nucleus | 38.26 | 36.67 |
| TraesCS7D01G052600.1 | Wheat | nucleus | 35.65 | 36.61 |
| Solyc12g056430.1.1 | Tomato | nucleus | 32.17 | 36.45 |
| Solyc03g124110.1.1 | Tomato | nucleus | 34.78 | 36.36 |
| TraesCS7D01G052400.1 | Wheat | nucleus | 34.35 | 36.07 |
| KRH77483 | Soybean | nucleus | 34.78 | 35.4 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 20.0 | 35.38 |
| PGSC0003DMT400032622 | Potato | nucleus | 36.52 | 35.29 |
| KRH09144 | Soybean | nucleus | 35.22 | 35.06 |
| Solyc08g007830.1.1 | Tomato | nucleus | 34.35 | 34.5 |
| PGSC0003DMT400037120 | Potato | nucleus | 35.22 | 34.32 |
| Solyc08g007820.1.1 | Tomato | nucleus | 35.65 | 33.61 |
| CDY66013 | Canola | nucleus | 27.39 | 32.98 |
| PGSC0003DMT400032621 | Potato | nucleus | 34.78 | 32.79 |
| KRH57258 | Soybean | nucleus | 36.09 | 32.68 |
| CDY52358 | Canola | nucleus | 26.52 | 32.28 |
| Bra010461.1-P | Field mustard | nucleus | 36.09 | 32.17 |
| KRH03987 | Soybean | nucleus | 35.65 | 32.16 |
| PGSC0003DMT400037121 | Potato | nucleus | 35.65 | 31.78 |
| Bra010460.1-P | Field mustard | nucleus | 36.09 | 30.18 |
| PGSC0003DMT400032623 | Potato | nucleus | 32.61 | 30.12 |
| Bra010463.1-P | Field mustard | nucleus | 27.83 | 28.57 |
| PGSC0003DMT400006896 | Potato | cytosol | 15.65 | 26.87 |
| KRH38616 | Soybean | plastid | 36.09 | 25.38 |
| PGSC0003DMT400090651 | Potato | nucleus | 36.09 | 25.23 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PFscan:PS51032 | PANTHER:PTHR31839 | PANTHER:PTHR31839:SF9 | SMART:SM00380 | SUPFAM:SSF54171 |
| EnsemblPlantsGene:TraesCS5D01G317300 | EnsemblPlants:TraesCS5D01G317300.1 | TIGR:cd00018 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5D:-:410606281..410607218
Molecular Weight (calculated)
25582.5 Da
IEP (calculated)
4.791
GRAVY (calculated)
-0.626
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTVGAWPHF EGQEYSTVWP EEEYRTVWSE PPKRRAGRNK LQETRHPVYR GVRRRGREGQ WVWVCELRVP AAGSRVYSRI WLGTFADPEM AARAHDSAAL
101: ALSGRDACLN FADSAWRMMP VHAAGSFKLA AAQEIKDAVA VALKEFQEQQ RPADVSKAPS STDSTSEESA PSITSSDLSG LDDEHWIGGM DAGSYYANLA
201: QGMLMEPPAA GAWREDREQD DGVDTSLWSY
101: ALSGRDACLN FADSAWRMMP VHAAGSFKLA AAQEIKDAVA VALKEFQEQQ RPADVSKAPS STDSTSEESA PSITSSDLSG LDDEHWIGGM DAGSYYANLA
201: QGMLMEPPAA GAWREDREQD DGVDTSLWSY
001: MNSFSAFSEM FGSDYESSVS SGGDYIPTLA SSCPKKPAGR KKFRETRHPI YRGVRRRNSG KWVCEVREPN KKTRIWLGTF QTAEMAARAH DVAALALRGR
101: SACLNFADSA WRLRIPESTC AKDIQKAAAE AALAFQDEMC DATTDHGFDM EETLVEAIYT AEQSENAFYM HDEAMFEMPS LLANMAEGML LPLPSVQWNH
201: NHEVDGDDDD VSLWSY
101: SACLNFADSA WRLRIPESTC AKDIQKAAAE AALAFQDEMC DATTDHGFDM EETLVEAIYT AEQSENAFYM HDEAMFEMPS LLANMAEGML LPLPSVQWNH
201: NHEVDGDDDD VSLWSY
Arabidopsis Description
DREB1ADehydration-responsive element-binding protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q9M0L0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.