Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G318100.1 | Wheat | nucleus, plastid | 88.74 | 87.61 |
| HORVU5Hr1G080340.1 | Barley | nucleus, plastid | 87.01 | 86.27 |
| TraesCS5D01G318600.1 | Wheat | nucleus | 63.64 | 63.09 |
| TraesCS5D01G318400.1 | Wheat | nucleus | 62.77 | 60.67 |
| Os09t0522100-00 | Rice | nucleus | 58.44 | 54.88 |
| TraesCS6D01G365800.1 | Wheat | nucleus | 58.01 | 54.69 |
| TraesCS6D01G173500.1 | Wheat | plastid | 57.14 | 54.32 |
| TraesCS5D01G318500.1 | Wheat | nucleus | 56.71 | 53.91 |
| TraesCS6D01G366100.1 | Wheat | nucleus | 56.71 | 53.69 |
| Zm00001d021205_P001 | Maize | plastid | 57.14 | 53.66 |
| TraesCS5D01G318800.1 | Wheat | nucleus, plastid | 54.98 | 52.92 |
| TraesCS5D01G317900.1 | Wheat | nucleus | 54.98 | 52.92 |
| Zm00001d006169_P001 | Maize | plastid | 57.58 | 50.38 |
| EER99211 | Sorghum | plastid | 58.44 | 49.09 |
| TraesCS5D01G317200.1 | Wheat | nucleus | 43.72 | 47.42 |
| TraesCS5D01G317700.1 | Wheat | nucleus | 43.29 | 47.17 |
| TraesCS5D01G318900.1 | Wheat | nucleus | 46.75 | 45.38 |
| TraesCS5D01G318300.1 | Wheat | nucleus | 41.56 | 44.86 |
| TraesCS5D01G317800.1 | Wheat | nucleus | 38.96 | 44.55 |
| TraesCS5D01G318000.1 | Wheat | nucleus | 41.56 | 43.64 |
| TraesCS6D01G238200.1 | Wheat | nucleus | 40.69 | 43.32 |
| TraesCS5D01G317300.1 | Wheat | nucleus | 42.42 | 42.61 |
| PGSC0003DMT400037122 | Potato | nucleus | 38.96 | 41.47 |
| Solyc03g026270.1.1 | Tomato | nucleus | 36.8 | 41.46 |
| Solyc03g026280.2.1 | Tomato | nucleus | 37.66 | 41.43 |
| TraesCS5D01G317500.1 | Wheat | nucleus | 40.26 | 41.15 |
| Bra027612.1-P | Field mustard | nucleus | 32.9 | 41.08 |
| CDY49205 | Canola | nucleus | 32.9 | 41.08 |
| AT1G63030.2 | Thale cress | nucleus | 31.6 | 40.33 |
| TraesCS2D01G015200.1 | Wheat | nucleus | 33.33 | 40.31 |
| TraesCS2D01G397000.1 | Wheat | nucleus | 36.8 | 39.17 |
| CDY57075 | Canola | nucleus | 35.06 | 39.13 |
| Bra019777.1-P | Field mustard | nucleus | 34.63 | 38.84 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 36.36 | 38.53 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 38.96 | 38.3 |
| Solyc03g124110.1.1 | Tomato | nucleus | 36.36 | 38.18 |
| CDY71145 | Canola | nucleus | 33.33 | 38.12 |
| Bra016763.1-P | Field mustard | nucleus | 33.33 | 38.12 |
| KRH35383 | Soybean | nucleus | 33.77 | 38.05 |
| AT4G25480.1 | Thale cress | nucleus | 35.5 | 37.96 |
| TraesCS5D01G317100.1 | Wheat | nucleus, plastid | 44.16 | 37.92 |
| Bra019162.1-P | Field mustard | nucleus | 35.06 | 37.85 |
| CDY70584 | Canola | nucleus | 35.06 | 37.85 |
| CDY16016 | Canola | nucleus | 32.9 | 37.81 |
| KRG91437 | Soybean | nucleus | 33.77 | 37.68 |
| PGSC0003DMT400010876 | Potato | nucleus | 33.77 | 37.68 |
| TraesCS7D01G052400.1 | Wheat | nucleus | 35.5 | 37.44 |
| CDY66018 | Canola | nucleus | 34.63 | 37.38 |
| CDX84868 | Canola | nucleus | 34.63 | 37.38 |
| Bra022770.1-P | Field mustard | nucleus | 34.63 | 37.38 |
| CDY52356 | Canola | nucleus | 35.06 | 37.33 |
| AT1G12610.1 | Thale cress | nucleus | 33.77 | 37.32 |
| CDX92710 | Canola | nucleus | 34.63 | 37.21 |
| CDY31270 | Canola | nucleus | 32.47 | 37.13 |
| AT4G25490.1 | Thale cress | nucleus | 34.2 | 37.09 |
| CDY26574 | Canola | nucleus | 32.9 | 37.07 |
| Bra026963.1-P | Field mustard | nucleus | 32.9 | 37.07 |
| Solyc12g056430.1.1 | Tomato | nucleus | 32.47 | 36.95 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 19.48 | 36.89 |
| PGSC0003DMT400037120 | Potato | nucleus | 37.66 | 36.86 |
| CDY52360 | Canola | nucleus | 35.06 | 36.65 |
| Bra028290.1-P | Field mustard | nucleus | 34.63 | 36.36 |
| CDY00510 | Canola | nucleus | 34.63 | 36.36 |
| TraesCS5D01G317400.1 | Wheat | nucleus | 43.29 | 36.36 |
| KRH77483 | Soybean | nucleus | 35.5 | 36.28 |
| TraesCS7D01G052600.1 | Wheat | nucleus | 35.06 | 36.16 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 20.35 | 36.15 |
| CDY65499 | Canola | nucleus | 33.77 | 36.11 |
| CDY31925 | Canola | nucleus | 34.2 | 35.91 |
| AT5G51990.1 | Thale cress | nucleus | 34.63 | 35.71 |
| TraesCS7D01G052500.1 | Wheat | nucleus | 35.06 | 35.68 |
| AT4G25470.1 | Thale cress | nucleus | 33.33 | 35.65 |
| TraesCS5D01G317600.1 | Wheat | nucleus, plastid | 34.2 | 35.43 |
| PGSC0003DMT400032622 | Potato | nucleus | 36.36 | 35.29 |
| Solyc08g007820.1.1 | Tomato | nucleus | 37.23 | 35.25 |
| PGSC0003DMT400032621 | Potato | nucleus | 36.8 | 34.84 |
| PGSC0003DMT400037121 | Potato | nucleus | 38.53 | 34.5 |
| KRH57258 | Soybean | nucleus | 37.66 | 34.25 |
| KRH03987 | Soybean | nucleus | 37.23 | 33.73 |
| Solyc08g007830.1.1 | Tomato | nucleus | 33.33 | 33.62 |
| KRH09144 | Soybean | nucleus | 33.33 | 33.33 |
| CDY52358 | Canola | nucleus | 25.54 | 31.22 |
| Bra010461.1-P | Field mustard | nucleus | 34.63 | 31.01 |
| CDY66013 | Canola | nucleus | 25.54 | 30.89 |
| PGSC0003DMT400006896 | Potato | cytosol | 17.75 | 30.6 |
| PGSC0003DMT400032623 | Potato | nucleus | 32.47 | 30.12 |
| Bra010460.1-P | Field mustard | nucleus | 35.06 | 29.45 |
| Bra010463.1-P | Field mustard | nucleus | 26.41 | 27.23 |
| KRH38616 | Soybean | plastid | 33.33 | 23.55 |
| PGSC0003DMT400090651 | Potato | nucleus | 32.9 | 23.1 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PFscan:PS51032 | PANTHER:PTHR31839 | PANTHER:PTHR31839:SF5 | SMART:SM00380 | SUPFAM:SSF54171 |
| EnsemblPlantsGene:TraesCS5D01G318200 | EnsemblPlants:TraesCS5D01G318200.1 | TIGR:cd00018 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5D:-:411148611..411149483
Molecular Weight (calculated)
24824.3 Da
IEP (calculated)
4.671
GRAVY (calculated)
-0.055
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTAIDSWIS SPSSSTSGHE HGEVVPVWSP AAKRPAGRTK FKETRHPVYR GVRRRGSAGR WVCEVRVPGK RGERLWLGTY AAAESAARAH DAAMLALLGH
101: SASAAACLNF PDSAWLLVMP PWLSDLADIR RAAIEAVAVF LCLEAAAVVP VVDEATSPVY LLSPVDNADE VFQLPTFSAQ GSDMFELDMS GEMDLDPYYA
201: GFAQGMLLEP PPTPAYWENG DGGAAAGLWS Y
101: SASAAACLNF PDSAWLLVMP PWLSDLADIR RAAIEAVAVF LCLEAAAVVP VVDEATSPVY LLSPVDNADE VFQLPTFSAQ GSDMFELDMS GEMDLDPYYA
201: GFAQGMLLEP PPTPAYWENG DGGAAAGLWS Y
001: MNSFSAFSEM FGSDYESPVS SGGDYSPKLA TSCPKKPAGR KKFRETRHPI YRGVRQRNSG KWVCELREPN KKTRIWLGTF QTAEMAARAH DVAAIALRGR
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
Arabidopsis Description
DREB1CC-repeat binding factor 2 [Source:UniProtKB/TrEMBL;Acc:B2BIW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.