Factsheet for TraesCS5D01G317600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G138200.2
TraesCS1D01G134200.1
TraesCS5A01G390300.2
TraesCS5B01G395200.1
TraesCS5D01G400100.2
TraesCSU01G003200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25490.1	TraesCS1A01G138200.2	AT3G54610.1	16603259
AT4G25490.1	TraesCS1D01G134200.1	AT3G54610.1	16603259
AT4G25490.1	TraesCSU01G003200.1	AT3G54610.1	16603259
AT4G25490.1	TraesCS5A01G390300.2	AT4G16420.1	16603259
AT4G25490.1	TraesCS5B01G395200.1	AT4G16420.1	16603259
AT4G25490.1	TraesCS5D01G400100.2	AT4G16420.1	16603259

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G310700.1	Wheat	nucleus	84.75	85.14
TraesCS1B01G335100.1	Wheat	nucleus	80.27	80.63
TraesCS5B01G311400.1	Wheat	nucleus	80.27	80.63
HORVU5Hr1G080300.1	Barley	nucleus	75.34	74.67
TraesCS5D01G317200.1	Wheat	nucleus	67.71	70.89
TraesCS5D01G317100.1	Wheat	nucleus, plastid	72.65	60.22
TraesCS5D01G317700.1	Wheat	nucleus	56.5	59.43
TraesCS5D01G318300.1	Wheat	nucleus	56.5	58.88
TraesCS5D01G317400.1	Wheat	nucleus	72.2	58.55
TraesCS5D01G317800.1	Wheat	nucleus	52.02	57.43
TraesCS5D01G318000.1	Wheat	nucleus	51.57	52.27
TraesCS5D01G317500.1	Wheat	nucleus	51.12	50.44
TraesCS5D01G317300.1	Wheat	nucleus	50.22	48.7
TraesCS6D01G238200.1	Wheat	nucleus	33.63	34.56
TraesCS5D01G318200.1	Wheat	nucleus, plastid	35.43	34.2
PGSC0003DMT400037119	Potato	mitochondrion	18.39	33.61
TraesCS5D01G318600.1	Wheat	nucleus	34.98	33.48
TraesCS5D01G318900.1	Wheat	nucleus	35.43	33.19
TraesCS2D01G397000.1	Wheat	nucleus	32.29	33.18
AT1G63030.2	Thale cress	nucleus	26.46	32.6
Bra027612.1-P	Field mustard	nucleus	26.91	32.43
CDY49205	Canola	nucleus	26.91	32.43
PGSC0003DMT400037118	Potato	mitochondrion	18.83	32.31
CDY66013	Canola	nucleus	27.35	31.94
Solyc03g026280.2.1	Tomato	nucleus	30.04	31.9
Solyc03g026270.1.1	Tomato	nucleus	29.15	31.71
TraesCS5D01G318500.1	Wheat	nucleus	34.53	31.69
TraesCS5D01G318100.1	Wheat	nucleus, plastid	33.18	31.62
AT4G25490.1	Thale cress	nucleus	30.04	31.46
TraesCS6D01G365800.1	Wheat	nucleus	34.53	31.43
KRG91437	Soybean	nucleus	29.15	31.4
TraesCS5D01G318400.1	Wheat	nucleus	33.63	31.38
KRH35383	Soybean	nucleus	28.7	31.22
CDY52358	Canola	nucleus	26.46	31.22
PGSC0003DMT400037122	Potato	nucleus	30.04	30.88
TraesCS6D01G366100.1	Wheat	nucleus	33.63	30.74
VIT_16s0100g00380.t01	Wine grape	nucleus	30.04	30.73
CDY71145	Canola	nucleus	27.8	30.69
Bra016763.1-P	Field mustard	nucleus	27.8	30.69
AT4G25480.1	Thale cress	nucleus	29.6	30.56
CDY00510	Canola	nucleus	30.04	30.45
Bra028290.1-P	Field mustard	nucleus	30.04	30.45
TraesCS6D01G173500.1	Wheat	plastid	33.18	30.45
TraesCS5D01G318800.1	Wheat	nucleus, plastid	32.74	30.42
TraesCS5D01G317900.1	Wheat	nucleus	32.74	30.42
CDY52356	Canola	nucleus	29.6	30.41
Bra022770.1-P	Field mustard	nucleus	29.15	30.37
Bra019162.1-P	Field mustard	nucleus	29.15	30.37
CDX84868	Canola	nucleus	29.15	30.37
CDY70584	Canola	nucleus	29.15	30.37
CDY66018	Canola	nucleus	29.15	30.37
AT5G51990.1	Thale cress	nucleus	30.49	30.36
CDX92710	Canola	nucleus	29.15	30.23
AT4G25470.1	Thale cress	nucleus	29.15	30.09
CDY31925	Canola	nucleus	29.6	30.0
CDY31270	Canola	nucleus	26.91	29.7
AT1G12610.1	Thale cress	nucleus	27.8	29.67
CDY52360	Canola	nucleus	29.15	29.41
CDY16016	Canola	nucleus	26.46	29.35
TraesCS2D01G015200.1	Wheat	nucleus	25.11	29.32
OQU89795	Sorghum	mitochondrion, nucleus	43.95	29.25
Bra019777.1-P	Field mustard	nucleus	26.91	29.13
Solyc03g124110.1.1	Tomato	nucleus	28.7	29.09
Solyc12g056430.1.1	Tomato	nucleus	26.46	29.06
CDY57075	Canola	nucleus	26.91	28.99
CDY26574	Canola	nucleus	26.46	28.78
Bra026963.1-P	Field mustard	nucleus	26.46	28.78
CDY65499	Canola	nucleus	27.8	28.7
PGSC0003DMT400010876	Potato	nucleus	26.01	28.02
PGSC0003DMT400037120	Potato	nucleus	29.15	27.54
TraesCS7D01G052400.1	Wheat	nucleus	26.91	27.4
Bra010463.1-P	Field mustard	nucleus	27.35	27.23
KRH77483	Soybean	nucleus	27.35	26.99
PGSC0003DMT400006896	Potato	cytosol	16.14	26.87
VIT_02s0025g04460.t01	Wine grape	nucleus	28.25	26.81
PGSC0003DMT400037121	Potato	nucleus	30.49	26.36
TraesCS7D01G052600.1	Wheat	nucleus	26.46	26.34
TraesCS7D01G052500.1	Wheat	nucleus	26.46	25.99
KRH09144	Soybean	nucleus	26.91	25.97
Bra010461.1-P	Field mustard	nucleus	29.15	25.19
Solyc08g007830.1.1	Tomato	nucleus	25.11	24.45
KRH57258	Soybean	nucleus	27.8	24.41
Bra010460.1-P	Field mustard	nucleus	29.15	23.64
PGSC0003DMT400032622	Potato	nucleus	25.11	23.53
PGSC0003DMT400032621	Potato	nucleus	25.56	23.36
KRH03987	Soybean	nucleus	26.01	22.75
Solyc08g007820.1.1	Tomato	nucleus	24.66	22.54
PGSC0003DMT400032623	Potato	nucleus	25.11	22.49
KRH38616	Soybean	plastid	28.25	19.27
PGSC0003DMT400090651	Potato	nucleus	27.8	18.84

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PFscan:PS51032	PANTHER:PTHR31839	PANTHER:PTHR31839:SF9	SMART:SM00380	SUPFAM:SSF54171
EnsemblPlantsGene:TraesCS5D01G317600	EnsemblPlants:TraesCS5D01G317600.1	TIGR:cd00018	SEG:seg	:	:

Description

No Description!

Coordinates

chr5D:+:410679011..410679968

Molecular Weight (calculated)

21629.6 Da

IEP (calculated)

4.584

GRAVY (calculated)

-0.062

Length

223 amino acids

Sequence
(BLAST)

001: MGVADAASRS GQQEQGHRTV SSEPPKRPXX XXXXXXXXXX XXXXXXXXXX XGQWVCEVRV PGVKGSRLWL GTFTTAEMAA RAHDAAVLAL SGRAACLNFA
101: DSAWRMLLVL AAGSFGFGSA REIKLAVAVA VIAFQQQQQI ILPVACPTVE AAASPSNTLF YMSSRDLLEL DEEQWFGGMD AGSYYESLAQ GMLMAPPDDR
201: ARREDAEQTG VETLTPLWNY LFD

Best Arabidopsis Sequence Match ( AT4G25470.1 )
(BLAST)

001: MNSFSAFSEM FGSDYESPVS SGGDYSPKLA TSCPKKPAGR KKFRETRHPI YRGVRQRNSG KWVCELREPN KKTRIWLGTF QTAEMAARAH DVAAIALRGR
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY

Arabidopsis Description

DREB1CC-repeat binding factor 2 [Source:UniProtKB/TrEMBL;Acc:B2BIW9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.