Factsheet for TraesCS5D01G318900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G138200.2
TraesCS1D01G134200.1
TraesCS5A01G390300.2
TraesCS5B01G395200.1
TraesCS5D01G400100.2
TraesCSU01G003200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25490.1	TraesCS1A01G138200.2	AT3G54610.1	16603259
AT4G25490.1	TraesCS1D01G134200.1	AT3G54610.1	16603259
AT4G25490.1	TraesCSU01G003200.1	AT3G54610.1	16603259
AT4G25490.1	TraesCS5A01G390300.2	AT4G16420.1	16603259
AT4G25490.1	TraesCS5B01G395200.1	AT4G16420.1	16603259
AT4G25490.1	TraesCS5D01G400100.2	AT4G16420.1	16603259

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G313000.1	Wheat	nucleus	95.38	96.19
TraesCS5A01G312000.1	Wheat	plastid	90.76	89.26
HORVU5Hr1G080450.1	Barley	nucleus, plastid	91.6	72.43
EER99213	Sorghum	nucleus	68.91	69.79
Os09t0522200-01	Rice	nucleus	68.91	68.91
EER99212	Sorghum	nucleus, plastid	68.49	67.92
Zm00001d021208_P001	Maize	plastid	63.87	65.8
Zm00001d021207_P001	Maize	nucleus	64.29	64.29
EER99214	Sorghum	plastid	65.13	63.52
TraesCS5D01G318600.1	Wheat	nucleus	50.42	51.5
TraesCS5D01G318800.1	Wheat	nucleus, plastid	49.58	49.17
TraesCS6D01G173500.1	Wheat	plastid	50.0	48.97
TraesCS5D01G318400.1	Wheat	nucleus	47.48	47.28
TraesCS6D01G365800.1	Wheat	nucleus	48.32	46.94
TraesCS5D01G318200.1	Wheat	nucleus, plastid	45.38	46.75
TraesCS5D01G318100.1	Wheat	nucleus, plastid	45.8	46.58
TraesCS6D01G366100.1	Wheat	nucleus	47.48	46.31
TraesCS5D01G317200.1	Wheat	nucleus	40.76	45.54
TraesCS5D01G317700.1	Wheat	nucleus	40.34	45.28
TraesCS5D01G317900.1	Wheat	nucleus	44.96	44.58
TraesCS5D01G317800.1	Wheat	nucleus	36.97	43.56
TraesCS5D01G318000.1	Wheat	nucleus	39.5	42.73
TraesCS5D01G318500.1	Wheat	nucleus	42.86	41.98
TraesCS5D01G318300.1	Wheat	nucleus	36.97	41.12
TraesCS6D01G238200.1	Wheat	nucleus	37.4	41.01
AT1G63030.2	Thale cress	nucleus	30.67	40.33
TraesCS2D01G015200.1	Wheat	nucleus	31.93	39.79
TraesCS5D01G317500.1	Wheat	nucleus	37.4	39.38
Bra027612.1-P	Field mustard	nucleus	30.25	38.92
CDY49205	Canola	nucleus	30.25	38.92
TraesCS2D01G397000.1	Wheat	nucleus	35.29	38.71
CDX92710	Canola	nucleus	34.87	38.6
Bra019162.1-P	Field mustard	nucleus	34.45	38.32
CDY70584	Canola	nucleus	34.45	38.32
TraesCS5D01G317300.1	Wheat	nucleus	36.97	38.26
TraesCS7D01G052400.1	Wheat	nucleus	34.45	37.44
Bra022770.1-P	Field mustard	nucleus	33.61	37.38
CDX84868	Canola	nucleus	33.61	37.38
KRG91437	Soybean	nucleus	32.35	37.2
Solyc03g026270.1.1	Tomato	nucleus	31.93	37.07
KRH35383	Soybean	nucleus	31.93	37.07
CDY66018	Canola	nucleus	33.19	36.92
TraesCS7D01G052600.1	Wheat	nucleus	34.45	36.61
PGSC0003DMT400037122	Potato	nucleus	33.19	36.41
VIT_16s0100g00380.t01	Wine grape	nucleus	33.19	36.24
TraesCS5D01G317100.1	Wheat	nucleus, plastid	40.76	36.06
CDY16016	Canola	nucleus	30.25	35.82
CDY57075	Canola	nucleus	31.09	35.75
Solyc03g026280.2.1	Tomato	nucleus	31.51	35.71
AT4G25470.1	Thale cress	nucleus	32.35	35.65
CDY52356	Canola	nucleus	32.35	35.48
Bra019777.1-P	Field mustard	nucleus	30.67	35.44
TraesCS5D01G317600.1	Wheat	nucleus, plastid	33.19	35.43
TraesCS5D01G317400.1	Wheat	nucleus	40.76	35.27
AT4G25480.1	Thale cress	nucleus	31.93	35.19
Bra016763.1-P	Field mustard	nucleus	29.83	35.15
CDY71145	Canola	nucleus	29.83	35.15
Bra026963.1-P	Field mustard	nucleus	30.25	35.12
CDY26574	Canola	nucleus	30.25	35.12
Solyc03g124110.1.1	Tomato	nucleus	32.35	35.0
AT4G25490.1	Thale cress	nucleus	31.09	34.74
TraesCS7D01G052500.1	Wheat	nucleus	32.77	34.36
CDY65499	Canola	nucleus	31.09	34.26
CDY31270	Canola	nucleus	28.99	34.16
Bra028290.1-P	Field mustard	nucleus	31.51	34.09
CDY00510	Canola	nucleus	31.51	34.09
AT1G12610.1	Thale cress	nucleus	29.83	33.97
CDY52360	Canola	nucleus	31.51	33.94
AT5G51990.1	Thale cress	nucleus	31.93	33.93
PGSC0003DMT400010876	Potato	nucleus	29.41	33.82
Solyc12g056430.1.1	Tomato	nucleus	28.57	33.5
CDY31925	Canola	nucleus	30.67	33.18
VIT_02s0025g04460.t01	Wine grape	nucleus	32.35	32.77
PGSC0003DMT400037120	Potato	nucleus	32.35	32.63
KRH77483	Soybean	nucleus	30.25	31.86
KRH09144	Soybean	nucleus	30.67	31.6
PGSC0003DMT400037119	Potato	mitochondrion	15.55	30.33
PGSC0003DMT400032622	Potato	nucleus	30.25	30.25
PGSC0003DMT400037121	Potato	nucleus	32.77	30.23
KRH57258	Soybean	nucleus	31.93	29.92
Solyc08g007820.1.1	Tomato	nucleus	30.25	29.51
Bra010461.1-P	Field mustard	nucleus	31.93	29.46
Solyc08g007830.1.1	Tomato	nucleus	28.15	29.26
PGSC0003DMT400032621	Potato	nucleus	29.83	29.1
KRH03987	Soybean	nucleus	31.09	29.02
CDY52358	Canola	nucleus	22.69	28.57
CDY66013	Canola	nucleus	22.69	28.27
PGSC0003DMT400032623	Potato	nucleus	28.99	27.71
PGSC0003DMT400037118	Potato	mitochondrion	15.13	27.69
Bra010460.1-P	Field mustard	nucleus	31.51	27.27
Bra010463.1-P	Field mustard	nucleus	23.11	24.55
PGSC0003DMT400006896	Potato	cytosol	13.03	23.13
PGSC0003DMT400090651	Potato	nucleus	31.51	22.8
KRH38616	Soybean	plastid	30.25	22.02

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31839	PANTHER:PTHR31839:SF10	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS5D01G318900	EnsemblPlants:TraesCS5D01G318900.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr5D:-:411845275..411845991

Molecular Weight (calculated)

25402.4 Da

IEP (calculated)

4.571

GRAVY (calculated)

-0.372

Length

238 amino acids

Sequence
(BLAST)

001: MCPIKREMSG ESGSPCSGES FYSPSTSPEN QQARQAAWTS APAKRPAGRT KFRETRHPVY RGVRRRGNAG RWVCEVRVPG RRGSRLWLGT FDTAEAAARA
101: NDAAMIALSA GGAGCLNFAD SAELLAVPAA SSYRSLDEVR HAVVEAVEDL LRREAIAEDD ALSGTSSSAP SSLTDDGSSS SPLPEEDSPF ELDVLSDMGW
201: DLYYASLAQA MLMAPPSSMA AALGDYGEVD VPLWSYQS

Best Arabidopsis Sequence Match ( AT4G25470.1 )
(BLAST)

001: MNSFSAFSEM FGSDYESPVS SGGDYSPKLA TSCPKKPAGR KKFRETRHPI YRGVRQRNSG KWVCELREPN KKTRIWLGTF QTAEMAARAH DVAAIALRGR
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY

Arabidopsis Description

DREB1CC-repeat binding factor 2 [Source:UniProtKB/TrEMBL;Acc:B2BIW9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.