CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90868
OQU91781

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25490.1	OQU91781	AT3G54610.1	16603259
AT4G25490.1	EER90868	AT4G16420.1	16603259

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021208_P001	Maize	plastid	86.38	87.88
EER99212	Sorghum	nucleus, plastid	79.57	77.92
EER99214	Sorghum	plastid	79.57	76.64
Os09t0522200-01	Rice	nucleus	74.47	73.53
TraesCS5B01G313000.1	Wheat	nucleus	69.36	69.07
TraesCS5D01G318900.1	Wheat	nucleus	69.79	68.91
TraesCS5A01G312000.1	Wheat	plastid	66.81	64.88
HORVU5Hr1G080450.1	Barley	nucleus, plastid	71.06	55.48
EES14131	Sorghum	nucleus, plastid	48.09	47.08
EER99211	Sorghum	plastid	53.19	45.45
AT1G63030.2	Thale cress	nucleus	30.64	39.78
Solyc03g026270.1.1	Tomato	nucleus	34.04	39.02
Bra027612.1-P	Field mustard	nucleus	30.21	38.38
CDY49205	Canola	nucleus	30.21	38.38
EES11288	Sorghum	nucleus	37.02	38.33
CDY70584	Canola	nucleus	34.89	38.32
Bra019162.1-P	Field mustard	nucleus	34.89	38.32
PGSC0003DMT400037122	Potato	nucleus	35.32	38.25
CDX92710	Canola	nucleus	34.89	38.14
CDY71145	Canola	nucleus	32.77	38.12
Bra016763.1-P	Field mustard	nucleus	32.77	38.12
Solyc03g026280.2.1	Tomato	nucleus	33.62	37.62
VIT_16s0100g00380.t01	Wine grape	nucleus	34.89	37.61
AT4G25480.1	Thale cress	nucleus	34.47	37.5
Bra022770.1-P	Field mustard	nucleus	34.04	37.38
CDX84868	Canola	nucleus	34.04	37.38
CDY31270	Canola	nucleus	31.91	37.13
CDY66018	Canola	nucleus	33.62	36.92
AT1G12610.1	Thale cress	nucleus	32.77	36.84
AT4G25490.1	Thale cress	nucleus	33.19	36.62
KRH35383	Soybean	nucleus	31.91	36.59
CDY52356	Canola	nucleus	33.62	36.41
KRG91437	Soybean	nucleus	31.91	36.23
PGSC0003DMT400010876	Potato	nucleus	31.91	36.23
AT4G25470.1	Thale cress	nucleus	33.19	36.11
Solyc12g056430.1.1	Tomato	nucleus	30.64	35.47
Solyc03g124110.1.1	Tomato	nucleus	33.19	35.45
CDY16016	Canola	nucleus	30.21	35.32
CDY57075	Canola	nucleus	31.06	35.27
PGSC0003DMT400037120	Potato	nucleus	35.32	35.17
EES02136	Sorghum	nucleus	36.17	35.12
Bra019777.1-P	Field mustard	nucleus	30.64	34.95
VIT_02s0025g04460.t01	Wine grape	nucleus	34.89	34.89
CDY52360	Canola	nucleus	32.77	34.84
CDY65499	Canola	nucleus	31.91	34.72
Bra026963.1-P	Field mustard	nucleus	30.21	34.63
CDY26574	Canola	nucleus	30.21	34.63
Bra028290.1-P	Field mustard	nucleus	32.34	34.55
CDY00510	Canola	nucleus	32.34	34.55
PGSC0003DMT400037119	Potato	mitochondrion	17.87	34.43
AT5G51990.1	Thale cress	nucleus	32.77	34.38
CDY31925	Canola	nucleus	31.49	33.64
EER87753	Sorghum	nucleus	34.89	32.93
OQU89795	Sorghum	mitochondrion, nucleus	46.38	32.54
KRH09144	Soybean	nucleus	31.91	32.47
PGSC0003DMT400037118	Potato	mitochondrion	17.87	32.31
KRH77483	Soybean	nucleus	31.06	32.3
PGSC0003DMT400037121	Potato	nucleus	34.89	31.78
Solyc08g007830.1.1	Tomato	nucleus	30.64	31.44
KRH57258	Soybean	nucleus	33.62	31.1
PGSC0003DMT400032622	Potato	nucleus	31.49	31.09
Solyc08g007820.1.1	Tomato	nucleus	31.49	30.33
PGSC0003DMT400032621	Potato	nucleus	31.49	30.33
Bra010461.1-P	Field mustard	nucleus	33.19	30.23
KRH03987	Soybean	nucleus	32.77	30.2
CDY52358	Canola	nucleus	24.26	30.16
CDY66013	Canola	nucleus	24.26	29.84
PGSC0003DMT400032623	Potato	nucleus	31.49	29.72
Bra010460.1-P	Field mustard	nucleus	32.77	28.0
OQU85641	Sorghum	nucleus	37.02	26.13
Bra010463.1-P	Field mustard	nucleus	24.68	25.89
PGSC0003DMT400006896	Potato	cytosol	14.04	24.63
PGSC0003DMT400090651	Potato	nucleus	32.77	23.4
KRH38616	Soybean	plastid	31.49	22.63

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	EntrezGene:8054870	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EMBL:AY785899
InterPro:DNA-bd_dom_sf	EnsemblPlants:EER99213	ProteinID:EER99213	ProteinID:EER99213.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31839	PANTHER:PTHR31839:SF10	UniProt:Q3T5N0	SMART:SM00380	EnsemblPlantsGene:SORBI_3002G269400
SUPFAM:SSF54171	unigene:Sbi.15903	UniParc:UPI00005B29B6	RefSeq:XP_002462692.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:-:65308866..65310093

Molecular Weight (calculated)

25115.0 Da

IEP (calculated)

4.726

GRAVY (calculated)

-0.305

Length

235 amino acids

Sequence
(BLAST)

001: MCPIKKEMTG ESSSPCSSAS TSSEHHQTVW TSRPKRPAGR TKFRETRHPV FRGVRRRGNA GRWVCEVRVP GRRGCRLWLG TFDTADAAAR AHDAAMLAIA
101: GAGACLNFAD SAWLLAVPAS YASLAEVRHA VAEAVEEFLL REVVQEDDAL SATSSTPPSS PSSSDDGSTS DGGESSESDS SPAATGASPF ELDVFNDMSW
201: DLYYASLAQG MLVEPPSAVT AFMDEGFADV PLWSY

Best Arabidopsis Sequence Match ( AT4G25470.1 )
(BLAST)

001: MNSFSAFSEM FGSDYESPVS SGGDYSPKLA TSCPKKPAGR KKFRETRHPI YRGVRQRNSG KWVCELREPN KKTRIWLGTF QTAEMAARAH DVAAIALRGR
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY

Arabidopsis Description

DREB1CC-repeat binding factor 2 [Source:UniProtKB/TrEMBL;Acc:B2BIW9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.