Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25490.1 | OQU91781 | AT3G54610.1 | 16603259 |
| AT4G25490.1 | EER90868 | AT4G16420.1 | 16603259 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d036003_P001 | Maize | nucleus | 68.67 | 73.71 |
| Os06t0127100-01 | Rice | nucleus | 60.64 | 70.56 |
| HORVU5Hr1G041600.1 | Barley | nucleus | 35.34 | 65.67 |
| TraesCS2D01G015200.1 | Wheat | nucleus | 50.2 | 65.44 |
| TraesCS2B01G002700.1 | Wheat | nucleus, plastid | 49.0 | 64.21 |
| TraesCS7D01G052400.1 | Wheat | nucleus | 55.02 | 62.56 |
| TraesCS7A01G057800.1 | Wheat | nucleus, plastid | 52.61 | 62.38 |
| TraesCS7A01G057700.1 | Wheat | nucleus | 55.42 | 61.33 |
| TraesCS7D01G052600.1 | Wheat | nucleus | 54.22 | 60.27 |
| TraesCS4A01G433300.1 | Wheat | nucleus | 52.21 | 60.19 |
| TraesCS4A01G433200.1 | Wheat | nucleus | 54.62 | 59.65 |
| TraesCS7D01G052500.1 | Wheat | nucleus | 53.41 | 58.59 |
| HORVU7Hr1G010510.2 | Barley | nucleus | 44.18 | 53.66 |
| EES11288 | Sorghum | nucleus | 43.78 | 48.02 |
| KRG91437 | Soybean | nucleus | 36.55 | 43.96 |
| KRH35383 | Soybean | nucleus | 36.14 | 43.9 |
| AT4G25490.1 | Thale cress | nucleus | 37.35 | 43.66 |
| Solyc03g026270.1.1 | Tomato | nucleus | 35.74 | 43.41 |
| VIT_16s0100g00380.t01 | Wine grape | nucleus | 37.75 | 43.12 |
| AT4G25480.1 | Thale cress | nucleus | 36.95 | 42.59 |
| AT1G63030.2 | Thale cress | nucleus | 30.92 | 42.54 |
| CDY52356 | Canola | nucleus | 36.95 | 42.4 |
| CDY65499 | Canola | nucleus | 36.14 | 41.67 |
| Bra022770.1-P | Field mustard | nucleus | 35.74 | 41.59 |
| CDX84868 | Canola | nucleus | 35.74 | 41.59 |
| PGSC0003DMT400037122 | Potato | nucleus | 36.14 | 41.47 |
| AT4G25470.1 | Thale cress | nucleus | 35.74 | 41.2 |
| CDY66018 | Canola | nucleus | 35.34 | 41.12 |
| CDX92710 | Canola | nucleus | 35.34 | 40.93 |
| CDY52360 | Canola | nucleus | 36.14 | 40.72 |
| Bra019162.1-P | Field mustard | nucleus | 34.94 | 40.65 |
| CDY70584 | Canola | nucleus | 34.94 | 40.65 |
| Solyc03g026280.2.1 | Tomato | nucleus | 33.73 | 40.0 |
| VIT_02s0025g04460.t01 | Wine grape | nucleus | 37.75 | 40.0 |
| Bra019777.1-P | Field mustard | nucleus | 32.93 | 39.81 |
| CDY00510 | Canola | nucleus | 34.94 | 39.55 |
| Bra028290.1-P | Field mustard | nucleus | 34.94 | 39.55 |
| AT5G51990.1 | Thale cress | nucleus | 35.34 | 39.29 |
| CDY57075 | Canola | nucleus | 32.53 | 39.13 |
| Bra016763.1-P | Field mustard | nucleus | 31.73 | 39.11 |
| CDY71145 | Canola | nucleus | 31.73 | 39.11 |
| CDY31925 | Canola | nucleus | 34.54 | 39.09 |
| CDY31270 | Canola | nucleus | 31.33 | 38.61 |
| Bra027612.1-P | Field mustard | nucleus | 28.51 | 38.38 |
| CDY49205 | Canola | nucleus | 28.51 | 38.38 |
| CDY16016 | Canola | nucleus | 30.92 | 38.31 |
| Solyc03g124110.1.1 | Tomato | nucleus | 33.33 | 37.73 |
| CDY26574 | Canola | nucleus | 30.92 | 37.56 |
| Bra026963.1-P | Field mustard | nucleus | 30.92 | 37.56 |
| AT1G12610.1 | Thale cress | nucleus | 31.33 | 37.32 |
| PGSC0003DMT400037120 | Potato | nucleus | 35.34 | 37.29 |
| EER99212 | Sorghum | nucleus, plastid | 35.74 | 37.08 |
| Solyc12g056430.1.1 | Tomato | nucleus | 30.12 | 36.95 |
| KRH09144 | Soybean | nucleus | 34.14 | 36.8 |
| PGSC0003DMT400010876 | Potato | nucleus | 30.52 | 36.72 |
| CDY52358 | Canola | nucleus | 27.71 | 36.51 |
| EES02136 | Sorghum | nucleus | 35.34 | 36.36 |
| CDY66013 | Canola | nucleus | 27.71 | 36.13 |
| KRH77483 | Soybean | nucleus | 31.73 | 34.96 |
| EER99213 | Sorghum | nucleus | 32.93 | 34.89 |
| PGSC0003DMT400037121 | Potato | nucleus | 36.14 | 34.88 |
| Solyc08g007830.1.1 | Tomato | nucleus | 31.73 | 34.5 |
| Bra010461.1-P | Field mustard | nucleus | 35.34 | 34.11 |
| EER99214 | Sorghum | plastid | 33.33 | 34.02 |
| EES14131 | Sorghum | nucleus, plastid | 32.53 | 33.75 |
| PGSC0003DMT400032622 | Potato | nucleus | 31.73 | 33.19 |
| Bra010460.1-P | Field mustard | nucleus | 36.14 | 32.73 |
| KRH03987 | Soybean | nucleus | 33.33 | 32.55 |
| Solyc08g007820.1.1 | Tomato | nucleus | 31.73 | 32.38 |
| PGSC0003DMT400037118 | Potato | mitochondrion | 16.87 | 32.31 |
| KRH57258 | Soybean | nucleus | 32.93 | 32.28 |
| PGSC0003DMT400037119 | Potato | mitochondrion | 15.66 | 31.97 |
| OQU85641 | Sorghum | nucleus | 42.57 | 31.83 |
| PGSC0003DMT400032621 | Potato | nucleus | 30.92 | 31.56 |
| EER99211 | Sorghum | plastid | 34.54 | 31.27 |
| PGSC0003DMT400032623 | Potato | nucleus | 30.92 | 30.92 |
| Bra010463.1-P | Field mustard | nucleus | 27.71 | 30.8 |
| KRH38616 | Soybean | plastid | 34.54 | 26.3 |
| PGSC0003DMT400090651 | Potato | nucleus | 33.73 | 25.53 |
| OQU89795 | Sorghum | mitochondrion, nucleus | 34.14 | 25.37 |
| PGSC0003DMT400006896 | Potato | cytosol | 13.25 | 24.63 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | EntrezGene:8069036 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EMBL:AY785898 |
| InterPro:DNA-bd_dom_sf | EnsemblPlants:EER87753 | ProteinID:EER87753 | ProteinID:EER87753.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 |
| PFscan:PS51032 | PANTHER:PTHR31839 | PANTHER:PTHR31839:SF0 | UniProt:Q3T5N1 | SMART:SM00380 | EnsemblPlantsGene:SORBI_3010G016500 |
| SUPFAM:SSF54171 | unigene:Sbi.13397 | UniParc:UPI00005B29B5 | RefSeq:XP_002436386.1 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr10:+:1315565..1316314
Molecular Weight (calculated)
26231.8 Da
IEP (calculated)
4.541
GRAVY (calculated)
-0.457
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MEYGVADDYG YGYGGYDDQQ DLPSSSSVDG DEYATVLSAP PKRPAGRTKF RETRHPVYRG VRRRGPAGRW VCEVREPNKK SRIWLGTFAT AEAAARAHDV
101: AALALRGRAA CLNFADSARL LRVDPATLAT PDDIRRAAIQ LAEDSSSSTP DASAAAAAVA VASSASVGQA TPSSSAYQAG DDATGAAMYG AEYAAAAMYG
201: AGMDFDHSYY YDGMVGGNEW QSAGSSGWHS NVDAGDDEGA GDMSLWSYY
101: AALALRGRAA CLNFADSARL LRVDPATLAT PDDIRRAAIQ LAEDSSSSTP DASAAAAAVA VASSASVGQA TPSSSAYQAG DDATGAAMYG AEYAAAAMYG
201: AGMDFDHSYY YDGMVGGNEW QSAGSSGWHS NVDAGDDEGA GDMSLWSYY
001: MNSFSAFSEM FGSDYESPVS SGGDYSPKLA TSCPKKPAGR KKFRETRHPI YRGVRQRNSG KWVCELREPN KKTRIWLGTF QTAEMAARAH DVAAIALRGR
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
101: SACLNFADSA WRLRIPESTC AKEIQKAAAE AALNFQDEMC HMTTDAHGLD MEETLVEAIY TPEQSQDAFY MDEEAMLGMS SLLDNMAEGM LLPSPSVQWN
201: YNFDVEGDDD VSLWSY
Arabidopsis Description
DREB1CC-repeat binding factor 2 [Source:UniProtKB/TrEMBL;Acc:B2BIW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.