Skip to main content
crop-pal logo
Sorghum
Search for another protein from :
Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 5
  • plastid 5
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:nucleus
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
EER87753
EER90868
EER99211
EER99212
EER99213
EER99214
EES02136
EES11288
EES14131
OQU85641
OQU89795

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G54610.1 EER90868 AT4G16420.1 16603259
AT3G54610.1 EER87753 AT4G25490.1 16603259
AT3G54610.1 EER99211 AT4G25490.1 16603259
AT3G54610.1 EER99212 AT4G25490.1 16603259
AT3G54610.1 EER99213 AT4G25490.1 16603259
AT3G54610.1 EER99214 AT4G25490.1 16603259
AT3G54610.1 EES02136 AT4G25490.1 16603259
AT3G54610.1 EES11288 AT4G25490.1 16603259
AT3G54610.1 EES14131 AT4G25490.1 16603259
AT3G54610.1 OQU85641 AT4G25490.1 16603259
AT3G54610.1 OQU89795 AT4G25490.1 16603259
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os10t0415900-01 Rice nucleus, plastid 90.68 91.39
HORVU1Hr1G034070.1 Barley nucleus, plastid 71.65 89.56
TraesCS1A01G138200.2 Wheat plastid 87.38 88.76
TraesCSU01G003200.1 Wheat plastid 87.18 88.56
TraesCS1D01G134200.1 Wheat plastid 87.18 88.56
Zm00001d014175_P004 Maize plastid 94.37 87.25
GSMUA_Achr8P04400_001 Banana plastid 68.35 65.67
VIT_07s0141g00150.t01 Wine grape cytosol 39.61 64.97
KRG95607 Soybean plastid 64.66 61.67
KRH67282 Soybean nucleus 64.85 61.51
CDX78250 Canola cytosol, nucleus, plastid 7.77 60.61
VIT_07s0141g00140.t01 Wine grape plastid 62.91 59.89
Solyc10g045400.1.1 Tomato nucleus 46.41 59.16
CDY13219 Canola nucleus, plastid 57.67 56.79
AT3G54610.1 Thale cress plastid 62.33 56.51
Solyc10g045390.1.1 Tomato nucleus 4.47 56.1
CDY64337 Canola plastid 59.61 56.02
CDX76140 Canola plastid 57.09 56.0
Bra014800.1-P Field mustard plastid 57.09 56.0
Bra014803.1-P Field mustard plastid 59.42 55.84
CDY55833 Canola plastid 59.61 55.82
Bra007082.1-P Field mustard nucleus 23.69 47.29
CDX78249 Canola endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 8.35 36.44
Protein Annotations
Gene3D:1.20.920.10MapMan:15.3.4.1.1Gene3D:3.40.630.30EntrezGene:8064917UniProt:A0A1Z5S785InterPro:Acyl_CoA_acyltransferase
InterPro:BromodomainInterPro:Bromodomain-like_sfInterPro:Bromodomain_CSInterPro:GCN5InterPro:GNAT_domGO:GO:0000003
GO:GO:0000123GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003824GO:GO:0004402
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005654GO:GO:0006464GO:GO:0007275GO:GO:0008080GO:GO:0008150GO:GO:0008152
GO:GO:0009416GO:GO:0009628GO:GO:0009653GO:GO:0009791GO:GO:0009908GO:GO:0009987
GO:GO:0010015GO:GO:0010321GO:GO:0010484GO:GO:0016043GO:GO:0016407GO:GO:0016573
GO:GO:0016740GO:GO:0019538InterPro:IPR000182InterPro:IPR001487InterPro:IPR036427EnsemblPlants:OQU91781
ProteinID:OQU91781ProteinID:OQU91781.1PFAM:PF00439PFAM:PF00583PRINTS:PR00503ScanProsite:PS00633
PFscan:PS50014PFscan:PS51186PANTHER:PTHR22880PANTHER:PTHR22880:SF124SMART:SM00297EnsemblPlantsGene:SORBI_3001G248100
SUPFAM:SSF47370SUPFAM:SSF55729UniParc:UPI0001A82046RefSeq:XP_002464623.1SEG:seg:
Description
hypothetical protein
Coordinates
chr1:+:26545536..26552133
Molecular Weight (calculated)
56836.6 Da
IEP (calculated)
6.956
GRAVY (calculated)
-0.642
Length
515 amino acids
Sequence
(BLAST)
001: MDGLAAPSPS HSGATSGGGA SHRKRKLPPS SLSDATADED DDTTAPSSPS TAPSSPSRPS SPSSSHSDDD EDDSLHTFNA ARLDGAPGGG SASGRPPKPD
101: SSSVSAASAA AAAAAGGGPK LEPGSATAGD GKEDPKGLFT DNLQTSGAYS AREEGLKREE DSGRLKFLCY SNDGVDEHMI WLVGLKNIFA RQLPNMPKEY
201: IVRLVMDRTH KSMMVIRNNI VVGGITYRPY ASQRFGEIAF CAITADEQVK GYGTRLMNHL KQHARDADGL THFLTYADNN AVGYFVKQGF TKEITLDKER
301: WQGYIKDYDG GILMQCKIDP KLPYVDLATM IRRQRQAIDE KIRDLSNCHI VYPGIDFQKK EAGIPRRLIK PEDIPGLREA GWTPDQWGHS KSRSAFSPDY
401: NTYRQQLANL MRTLLKNLSE HPDAWPFKEP VDSRDVPDYY DIIKDPIDLK TMLRRVDSEQ YYVTLEMFVA DMKRMFSNAR TYNSPDTIYY KCATRLENFF
501: STKIASLVSQ ASTKS
Best Arabidopsis Sequence Match ( AT3G54610.1 )
(BLAST)
001: MDSHSSHLNA ANRSRSSQTP SPSHSASASV TSSLHKRKLA ATTAANAAAS EDHAPPSSSF PPSSFSADTR DGALTSNDEL ESISARGADT DSDPDESEDI
101: VVDDDEDEFA PEQDQDSSIR TFTAARLDSS SGVNGSSRNT KLKTESSTVK LESSDGGKDG GSSVVGTGVS GTVGGSSISG LVPKDESVKV LAENFQTSGA
201: YIAREEALKR EEQAGRLKFV CYSNDSIDEH MMCLIGLKNI FARQLPNMPK EYIVRLLMDR KHKSVMVLRG NLVVGGITYR PYHSQKFGEI AFCAITADEQ
301: VKGYGTRLMN HLKQHARDVD GLTHFLTYAD NNAVGYFVKQ GFTKEIYLEK DVWHGFIKDY DGGLLMECKI DPKLPYTDLS SMIRQQRKAI DERIRELSNC
401: QNVYPKIEFL KNEAGIPRKI IKVEEIRGLR EAGWTPDQWG HTRFKLFNGS ADMVTNQKQL NALMRALLKT MQDHADAWPF KEPVDSRDVP DYYDIIKDPI
501: DLKVIAKRVE SEQYYVTLDM FVADARRMFN NCRTYNSPDT IYYKCATRLE THFHSKVQAG LQSGAKSQ
Arabidopsis Description
HAG1Histone acetyltransferase GCN5 [Source:UniProtKB/Swiss-Prot;Acc:Q9AR19]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.