CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90526
CDY09696
CDY34465
CDY42533
CDY69435

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54610.1	CDX90526	AT4G16420.1	16603259
AT3G54610.1	CDY09696	AT4G16420.1	16603259
AT3G54610.1	CDY34465	AT4G16420.1	16603259
AT3G54610.1	CDY42533	AT4G16420.1	16603259
AT3G54610.1	CDY69435	AT4G16420.1	16603259

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g045390.1.1	Tomato	nucleus	27.27	43.9
Bra007082.1-P	Field mustard	nucleus	93.94	24.03
CDY64337	Canola	plastid	75.76	9.12
CDY55833	Canola	plastid	75.76	9.09
CDY13219	Canola	nucleus, plastid	71.21	8.99
AT3G54610.1	Thale cress	plastid	75.76	8.8
CDX76140	Canola	plastid	69.7	8.76
Os10t0415900-01	Rice	nucleus, plastid	60.61	7.83
OQU91781	Sorghum	plastid	60.61	7.77
KRG95607	Soybean	plastid	62.12	7.59
KRH67282	Soybean	nucleus	62.12	7.55
TraesCS1A01G138200.2	Wheat	plastid	57.58	7.5
TraesCS1D01G134200.1	Wheat	plastid	57.58	7.5
TraesCSU01G003200.1	Wheat	plastid	57.58	7.5
VIT_07s0141g00140.t01	Wine grape	plastid	60.61	7.39
Zm00001d014175_P004	Maize	plastid	57.58	6.82
GSMUA_Achr8P04400_001	Banana	plastid	54.55	6.72
CDX78249	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	3.03	1.69
Solyc10g045400.1.1	Tomato	nucleus	7.58	1.24
HORVU1Hr1G034070.1	Barley	nucleus, plastid	3.03	0.49

Protein Annotations

Gene3D:1.20.920.10	MapMan:35.1	InterPro:BPTF	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	EnsemblPlants:CDX78250
ProteinID:CDX78250	ProteinID:CDX78250.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016589	GO:GO:0035064	EnsemblPlantsGene:GSBRNA2T00129585001
InterPro:IPR001487	InterPro:IPR036427	PFAM:PF00439	PFscan:PS50014	PANTHER:PTHR22880	PANTHER:PTHR22880:SF137
SUPFAM:SSF47370	UniParc:UPI0004EE020A	:	:	:	:

Description

BnaA09g34450D

Coordinates

chrLK031814:+:1987282..1987574

Molecular Weight (calculated)

7649.0 Da

IEP (calculated)

6.385

GRAVY (calculated)

-0.382

Length

66 amino acids

Sequence
(BLAST)

1: MVYVNTDLKT IAKRVESEEY YVTLDMFVAD ARRMFNNCRT YNSPDTIYYK CATSQVGNTS SSPVWC

Best Arabidopsis Sequence Match ( AT3G54610.1 )
(BLAST)

001: MDSHSSHLNA ANRSRSSQTP SPSHSASASV TSSLHKRKLA ATTAANAAAS EDHAPPSSSF PPSSFSADTR DGALTSNDEL ESISARGADT DSDPDESEDI
101: VVDDDEDEFA PEQDQDSSIR TFTAARLDSS SGVNGSSRNT KLKTESSTVK LESSDGGKDG GSSVVGTGVS GTVGGSSISG LVPKDESVKV LAENFQTSGA
201: YIAREEALKR EEQAGRLKFV CYSNDSIDEH MMCLIGLKNI FARQLPNMPK EYIVRLLMDR KHKSVMVLRG NLVVGGITYR PYHSQKFGEI AFCAITADEQ
301: VKGYGTRLMN HLKQHARDVD GLTHFLTYAD NNAVGYFVKQ GFTKEIYLEK DVWHGFIKDY DGGLLMECKI DPKLPYTDLS SMIRQQRKAI DERIRELSNC
401: QNVYPKIEFL KNEAGIPRKI IKVEEIRGLR EAGWTPDQWG HTRFKLFNGS ADMVTNQKQL NALMRALLKT MQDHADAWPF KEPVDSRDVP DYYDIIKDPI
501: DLKVIAKRVE SEQYYVTLDM FVADARRMFN NCRTYNSPDT IYYKCATRLE THFHSKVQAG LQSGAKSQ

Arabidopsis Description

HAG1Histone acetyltransferase GCN5 [Source:UniProtKB/Swiss-Prot;Acc:Q9AR19]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.