CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
mitochondrion 1
cytosol 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90526
CDY09696
CDY34465
CDY42533
CDY69435

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54610.1	CDX90526	AT4G16420.1	16603259
AT3G54610.1	CDY09696	AT4G16420.1	16603259
AT3G54610.1	CDY34465	AT4G16420.1	16603259
AT3G54610.1	CDY42533	AT4G16420.1	16603259
AT3G54610.1	CDY69435	AT4G16420.1	16603259

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007082.1-P	Field mustard	nucleus	82.2	37.6
CDX76140	Canola	plastid	50.0	11.24
CDY64337	Canola	plastid	51.69	11.13
CDY55833	Canola	plastid	51.69	11.09
CDY13219	Canola	nucleus, plastid	49.15	11.09
AT3G54610.1	Thale cress	plastid	50.0	10.39
KRH67282	Soybean	nucleus	46.61	10.13
KRG95607	Soybean	plastid	45.76	10.0
TraesCS1A01G138200.2	Wheat	plastid	38.98	9.07
TraesCS1D01G134200.1	Wheat	plastid	38.98	9.07
TraesCSU01G003200.1	Wheat	plastid	38.98	9.07
GSMUA_Achr8P04400_001	Banana	plastid	40.68	8.96
Os10t0415900-01	Rice	nucleus, plastid	37.29	8.61
VIT_07s0141g00140.t01	Wine grape	plastid	38.98	8.5
OQU91781	Sorghum	plastid	36.44	8.35
Zm00001d014175_P004	Maize	plastid	34.75	7.36
HORVU1Hr1G034070.1	Barley	nucleus, plastid	19.49	5.58
CDX78250	Canola	cytosol, nucleus, plastid	1.69	3.03
Solyc10g045400.1.1	Tomato	nucleus	5.93	1.73
Solyc10g045390.1.1	Tomato	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.20.920.10	MapMan:35.1	InterPro:BPTF	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	EnsemblPlants:CDX78249
ProteinID:CDX78249	ProteinID:CDX78249.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016589	GO:GO:0035064	EnsemblPlantsGene:GSBRNA2T00129584001
InterPro:IPR001487	InterPro:IPR036427	PFscan:PS50014	PANTHER:PTHR22880	PANTHER:PTHR22880:SF137	SUPFAM:SSF47370
UniParc:UPI0004EEE661	:	:	:	:	:

Description

BnaA09g34440D

Coordinates

chrLK031814:+:1985781..1987067

Molecular Weight (calculated)

13321.7 Da

IEP (calculated)

5.060

GRAVY (calculated)

-0.350

Length

118 amino acids

Sequence
(BLAST)

001: MHDTPAKKSK PLNILLTLLK YFLEPSSSTV YEAVVSLSIC SLFSSDVVDN FGDAGWTPDQ WGHTRYKLFN GFVDNATKQK QLNAPIRTMQ DHANAWPFKE
101: PVDALDVADY YDIIKDPP

Best Arabidopsis Sequence Match ( AT3G54610.1 )
(BLAST)

001: MDSHSSHLNA ANRSRSSQTP SPSHSASASV TSSLHKRKLA ATTAANAAAS EDHAPPSSSF PPSSFSADTR DGALTSNDEL ESISARGADT DSDPDESEDI
101: VVDDDEDEFA PEQDQDSSIR TFTAARLDSS SGVNGSSRNT KLKTESSTVK LESSDGGKDG GSSVVGTGVS GTVGGSSISG LVPKDESVKV LAENFQTSGA
201: YIAREEALKR EEQAGRLKFV CYSNDSIDEH MMCLIGLKNI FARQLPNMPK EYIVRLLMDR KHKSVMVLRG NLVVGGITYR PYHSQKFGEI AFCAITADEQ
301: VKGYGTRLMN HLKQHARDVD GLTHFLTYAD NNAVGYFVKQ GFTKEIYLEK DVWHGFIKDY DGGLLMECKI DPKLPYTDLS SMIRQQRKAI DERIRELSNC
401: QNVYPKIEFL KNEAGIPRKI IKVEEIRGLR EAGWTPDQWG HTRFKLFNGS ADMVTNQKQL NALMRALLKT MQDHADAWPF KEPVDSRDVP DYYDIIKDPI
501: DLKVIAKRVE SEQYYVTLDM FVADARRMFN NCRTYNSPDT IYYKCATRLE THFHSKVQAG LQSGAKSQ

Arabidopsis Description

HAG1Histone acetyltransferase GCN5 [Source:UniProtKB/Swiss-Prot;Acc:Q9AR19]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.