CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11557
KRH36579

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54610.1	KRH11557	AT4G16420.1	16603259
AT3G54610.1	KRH36579	AT4G16420.1	16603259

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95607	Soybean	plastid	96.32	96.85
Solyc10g045390.1.1	Tomato	nucleus	6.45	85.37
Solyc10g045400.1.1	Tomato	nucleus	58.38	78.47
VIT_07s0141g00140.t01	Wine grape	plastid	76.98	77.26
AT3G54610.1	Thale cress	plastid	75.87	72.54
GSMUA_Achr8P04400_001	Banana	plastid	69.43	70.34
CDY64337	Canola	plastid	70.72	70.07
Bra014803.1-P	Field mustard	plastid	70.53	69.89
CDY55833	Canola	plastid	70.53	69.64
CDX76140	Canola	plastid	66.3	68.57
CDY13219	Canola	nucleus, plastid	65.93	68.45
Bra014800.1-P	Field mustard	plastid	66.11	68.38
TraesCS1A01G138200.2	Wheat	plastid	61.88	66.27
TraesCSU01G003200.1	Wheat	plastid	61.88	66.27
TraesCS1D01G134200.1	Wheat	plastid	61.69	66.08
Os10t0415900-01	Rice	nucleus, plastid	61.88	65.75
OQU91781	Sorghum	plastid	61.51	64.85
HORVU1Hr1G034070.1	Barley	nucleus, plastid	48.43	63.84
CDX78250	Canola	cytosol, nucleus, plastid	7.55	62.12
Zm00001d014175_P004	Maize	plastid	60.77	59.25
Bra007082.1-P	Field mustard	nucleus	25.23	53.1
CDX78249	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	10.13	46.61

Protein Annotations

Gene3D:1.20.920.10	EntrezGene:100813942	MapMan:15.3.4.1.1	Gene3D:3.40.630.30	EMBL:ACUP02002049	InterPro:Acyl_CoA_acyltransferase
InterPro:Bromodomain	InterPro:Bromodomain-like_sf	InterPro:Bromodomain_CS	InterPro:GCN5	EnsemblPlantsGene:GLYMA_03G158300	InterPro:GNAT_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008080	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016573
GO:GO:0016740	GO:GO:0019538	UniProt:I1JNY5	InterPro:IPR000182	InterPro:IPR001487	InterPro:IPR036427
EnsemblPlants:KRH67282	ProteinID:KRH67282	ProteinID:KRH67282.1	PFAM:PF00439	PFAM:PF00583	PRINTS:PR00503
ScanProsite:PS00633	PFscan:PS50014	PFscan:PS51186	PANTHER:PTHR22880	PANTHER:PTHR22880:SF124	SMART:SM00297
SUPFAM:SSF47370	SUPFAM:SSF55729	UniParc:UPI0001FBDA8E	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:37359127..37366253

Molecular Weight (calculated)

60784.1 Da

IEP (calculated)

6.250

GRAVY (calculated)

-0.661

Length

543 amino acids

Sequence
(BLAST)

001: MDFHGGGPLR SRSSQSPSPS HSASASATSS IHKRKLVSED HAPPFPPSSF SADTRDGALT SNDDLESISA RGADSDSDSE SEDAVVDDDE DDYDNDNDND
101: SSMRTFTASR LSNPPSAPRN TKLKTENSTV KIENSDGAKD AGAVGSGAAA AAGPVPGIVV KEDPTKIFTD NLQTSGAYTA REESLKKEEE AGKLKFVCLS
201: NDGVDEHMVW LIGLKNIFAR QLPNMPKEYI VRLVMDRSHK SVMVIRRNHV VGGITYRPYA SQRFGEIAFC AITADEQVKG YGTRLMNHLK QFARDMDGLT
301: HFLTYADNNA VGYFIKQGFT KEIHLEKDRW QGYIKDYDGG ILMECKIDPK LPYTDLSTMI RRQRQAIDEK IRELSNCHIV YAGIDFQKKE AGIPKKIIDD
401: IPGLREAGWT PDQWGHSRFR TLNVSSDNAT NQKHLNGFMR SLLKSMFDHA DAWPFKEPVD ARDVPDYYDI IKDPMDLKTM SKRVDSEQYY VTFEMFVADA
501: RRMFANARTY NSPETIYYKC STRLEAHFQS KVQAGLQPGT KIQ

Best Arabidopsis Sequence Match ( AT3G54610.1 )
(BLAST)

001: MDSHSSHLNA ANRSRSSQTP SPSHSASASV TSSLHKRKLA ATTAANAAAS EDHAPPSSSF PPSSFSADTR DGALTSNDEL ESISARGADT DSDPDESEDI
101: VVDDDEDEFA PEQDQDSSIR TFTAARLDSS SGVNGSSRNT KLKTESSTVK LESSDGGKDG GSSVVGTGVS GTVGGSSISG LVPKDESVKV LAENFQTSGA
201: YIAREEALKR EEQAGRLKFV CYSNDSIDEH MMCLIGLKNI FARQLPNMPK EYIVRLLMDR KHKSVMVLRG NLVVGGITYR PYHSQKFGEI AFCAITADEQ
301: VKGYGTRLMN HLKQHARDVD GLTHFLTYAD NNAVGYFVKQ GFTKEIYLEK DVWHGFIKDY DGGLLMECKI DPKLPYTDLS SMIRQQRKAI DERIRELSNC
401: QNVYPKIEFL KNEAGIPRKI IKVEEIRGLR EAGWTPDQWG HTRFKLFNGS ADMVTNQKQL NALMRALLKT MQDHADAWPF KEPVDSRDVP DYYDIIKDPI
501: DLKVIAKRVE SEQYYVTLDM FVADARRMFN NCRTYNSPDT IYYKCATRLE THFHSKVQAG LQSGAKSQ

Arabidopsis Description

HAG1Histone acetyltransferase GCN5 [Source:UniProtKB/Swiss-Prot;Acc:Q9AR19]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.